Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_I03
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    31   0.11 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   5.5  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   7.2  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.5  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    25   9.5  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    25   9.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.5  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    25   9.5  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 280 DTAVLHPIHAIEHVMIAIINNRIAGYSTFT-PIKCLYIKSLYNKNPLA 140
           +   L+PI  ++++ + +  N +A + TF+ P+ CL + + +N NP+A
Sbjct: 174 ENGFLNPI--LDYLKLLLSGNPVAEHETFSHPVGCLIVITSHNTNPMA 219


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = +2

Query: 62   SLDELLEIFSVNF*CIIRYVSCGAVRSEWIFVVQTFYIQTFYWCECGVSRDSIIDDGDHN 241
            +L E+L + S    C+   ++   VR   ++  + FY +     E  +     +   D  
Sbjct: 740  TLSEILAVRSKEL-CVQVSLAETYVRLAKLYHARGFYSRAADSLEKSIQICCNVLKEDIT 798

Query: 242  MFYSMDRMEDGCI-IAPDSHYHNRNPNSTSGD 334
              +S + + D C+      +YHNR PNS   D
Sbjct: 799  SIFSWEILGDACLSFCQLKNYHNRFPNSLISD 830


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 328 W*S*SSLALCGLWWCGTMW 384
           W + + +A+CGL W  T+W
Sbjct: 449 WQAQAMVAICGLSWACTLW 467


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 458 LKMGSVTCKVRMLWGHRGQMITRHQATYRSLVVAKVLSIPYTSPT 592
           L + + TC  RM+W  RG+     +  Y  ++ + + S  +  PT
Sbjct: 656 LNVPNKTCDRRMVWAWRGEYYPAKKGEYH-MIYSALQSERFPGPT 699


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 557 AKVLSIPYTSPTHQNAPRY 613
           +KV+SIP++ P+  + P+Y
Sbjct: 299 SKVVSIPHSGPSKSSLPKY 317


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 95  NF*CIIRYVSCGAVRSEWIFVVQ 163
           NF CI++YVSCG +     ++V+
Sbjct: 443 NF-CIVKYVSCGPISEVLPYLVR 464


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 183 FIGVNVEYPAILLLMMAIITCSIAWIGWR 269
           F+ +++  P I+L  M    CSI W G R
Sbjct: 704 FLTLSIRDPIIVLSTMRPYLCSIYWAGSR 732


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 139 PNSTTADIANNTLKVNTKYFQQFVERPIVLC 47
           PNS T    + + KV TK +  FVE     C
Sbjct: 61  PNSVTLSYVSRSSKVATKCWVDFVENSDQFC 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,430
Number of Sequences: 5004
Number of extensions: 59451
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)