Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_I03
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0205 - 41978437-41980599,41980805-41981215 31 1.1
02_05_0850 + 32209798-32210086,32210779-32212316 29 3.2
05_01_0316 + 2476689-2477030,2477164-2477283,2477742-2477819,247... 28 5.6
03_05_0513 - 25073518-25073623,25073719-25073777,25074048-250741... 28 5.6
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 28 7.5
01_06_1199 + 35355690-35355732,35355793-35355930,35356366-353563... 28 7.5
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 7.5
04_04_0131 - 22976155-22976325,22977560-22977653,22977835-22978202 27 9.9
>01_07_0205 - 41978437-41980599,41980805-41981215
Length = 857
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 411 QFFEDTRGADANSAESLKWDRLHVKFECCGVTGA 512
QF G +AE KWDRL + ECCG+ A
Sbjct: 210 QFLLVLDGVSRFNAE--KWDRLKISLECCGLGSA 241
>02_05_0850 + 32209798-32210086,32210779-32212316
Length = 608
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 266 EDGCIIAPDSHYHNRNPNSTSGDHRVHLLCVGYGGVGQCGDRRENYHDAVLRRHQG 433
E C +S+ + RNP H V L + +CG E+Y+ AV R G
Sbjct: 124 EKSCRSRYESYLYRRNPGRRPSPHLVARLRMHEELQRRCGPNTESYNRAVQRLRDG 179
>05_01_0316 +
2476689-2477030,2477164-2477283,2477742-2477819,
2477956-2478132,2478317-2478394,2478694-2478866,
2478994-2479149,2479573-2479633,2479831-2480049
Length = 467
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 533 ATYRSLVVAKVLSIPYTSPTHQNAPRYISGGAESSY 640
ATYR V + L Y SP + RYI G+ Y
Sbjct: 354 ATYRGHSVLRTLIRCYFSPVYSTGQRYIYTGSSDEY 389
>03_05_0513 -
25073518-25073623,25073719-25073777,25074048-25074185,
25074719-25074982,25075062-25075306,25075874-25076081
Length = 339
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 568 LDSLHKPYASECAALYLRGC 627
LD+L PYA C L+ +GC
Sbjct: 239 LDTLFNPYALSCGHLFCKGC 258
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 87 LVLTFNVLFAMSAVVLFGASGFLLYKLFIYRHFIGVNV-EYPAILLLMMAIITCSIAWIG 263
++LT NVL ++ F + L Y LF +G V ++L + ++T ++AW
Sbjct: 177 IILTLNVLLLGGHIIFFQSLSLLGYCLFPLD--VGALVCMLKDNVILKIIVVTVTLAWSS 234
Query: 264 W 266
W
Sbjct: 235 W 235
>01_06_1199 +
35355690-35355732,35355793-35355930,35356366-35356389,
35356450-35356587,35356974-35357056,35358881-35358922,
35359151-35359231,35359319-35359414,35359530-35359736,
35359810-35359963,35360170-35360373,35361037-35361921,
35362025-35362071
Length = 713
Score = 27.9 bits (59), Expect = 7.5
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = -2
Query: 562 LGHNKRTVRGLMSRNHLAPVTPQHSNFTCNR---SHFKDSAEFASAPLVSSKNCVMVVFT 392
L H+K+T+ G ++R VT F CNR + K + +VS +N V+ T
Sbjct: 285 LPHHKQTINGEVTR-----VT-----FKCNRFGKENSKKKKQQTEETVVSKRNTNQVILT 334
Query: 391 SISTLSHTTIAHTKQVNSMITTSTIR 314
TT+ +TK+ S + TS R
Sbjct: 335 YSLRGGMTTLPYTKKDISNVRTSINR 360
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -2
Query: 271 VLHPIHAIEHVMIAIINNRIAGYSTFTPIKCLYIKSLYNKNPL 143
+ H + AIE V+I ++ +R+A YST+ I C+ + S + PL
Sbjct: 1247 IRHRLCAIE-VLIDVLGHRVALYSTWFYIICI-VGSYIQRQPL 1287
>04_04_0131 - 22976155-22976325,22977560-22977653,22977835-22978202
Length = 210
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/63 (17%), Positives = 30/63 (47%)
Frame = +3
Query: 78 WKYLVLTFNVLFAMSAVVLFGASGFLLYKLFIYRHFIGVNVEYPAILLLMMAIITCSIAW 257
+K++ L ++ +F M + G + ++Y + +V+Y ++ + ++ C+ A
Sbjct: 75 YKHIPLVYHTIFTMILLPTRRIKGMERARAYVYMRYSAASVKY-SLCFITQVVVRCTDAV 133
Query: 258 IGW 266
W
Sbjct: 134 ARW 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,500,406
Number of Sequences: 37544
Number of extensions: 396410
Number of successful extensions: 1076
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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