Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_H15
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   3.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   3.1  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    24   7.1  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 41   MNICENQYSFVIVIKVCSILYL*P 112
            M  C +     +++K C+ILYL P
Sbjct: 1868 MQQCASDIGIFLIVKKCAILYLNP 1891


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 99   RILHTLITITKEY*FSHMFILLIRYLECFRQ 7
            RI+ + I ++ E  +SH+ +  I  ++C +Q
Sbjct: 1730 RIIQSYIDVSAELGYSHVCLQYISLMQCLKQ 1760


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 198 YLHNIGQINKIEIIKFVCVAKLQ 130
           Y+H   +I  + I+  +CVA LQ
Sbjct: 113 YIHYAQKIKAVNIVGKICVAALQ 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 875,080
Number of Sequences: 5004
Number of extensions: 13866
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)