Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_H10
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   8.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 533 VSHIRNVCDRLNEEQNGCGKKWFPHM 610
           V H  N+ D  N +    G+K  PH+
Sbjct: 454 VDHKNNLGDSKNNQDGNNGEKKKPHI 479


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 533 VSHIRNVCDRLNEEQNGCGKKWFPHM 610
           V H  N+ D  N +    G+K  PH+
Sbjct: 346 VDHKNNLGDSKNNQDGNNGEKKKPHI 371


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -3

Query: 160 IVQFYELIWSFCFTF 116
           ++QF  +++SFC+ +
Sbjct: 262 LIQFNTIVFSFCYCY 276


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 194 SRGKDAHMIH 223
           S+G+D HM+H
Sbjct: 12  SKGQDKHMVH 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,588
Number of Sequences: 336
Number of extensions: 3562
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)