Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_H08
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...   262   3e-71
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    29   0.58 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   1.8  
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    27   3.1  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   4.1  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   4.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   7.1  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   9.4  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    25   9.4  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    25   9.4  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score =  262 bits (642), Expect = 3e-71
 Identities = 116/180 (64%), Positives = 149/180 (82%)
 Frame = +1

Query: 109 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 288
           FK I  +P    F+D++LS+TQRKTPTV+   +KISRIRGFY RKVK+TQ    ++L  I
Sbjct: 6   FKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSI 65

Query: 289 IQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYR 468
           +QEFPKL+D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++NVA+DY+RLLKYGDSLYR
Sbjct: 66  LQEFPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYR 125

Query: 469 CKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARXPXSIDPYTRTIIICGIPKCRKIXF 648
           CKQLKRAALGRMATI+KRQ ++L +LEQVRQHL+R P +IDP TRT+++CG P   K  F
Sbjct: 126 CKQLKRAALGRMATIIKRQKSSLEFLEQVRQHLSRLP-AIDPNTRTLLVCGYPNVGKSSF 184


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +1

Query: 64  DTKIALN*NKMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRK 243
           +TK+ LN  ++S+  FKK   +  A D      +K   + P V+++H        F +  
Sbjct: 298 ETKVYLNNERISISGFKKYVEMYLASD------TKPDEEPPRVIYEHVNDRWDVAFAVSD 351

Query: 244 VKYTQQNFHDRLSRI 288
            ++ Q +F + +S I
Sbjct: 352 GQFKQVSFVNNISTI 366


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 115  KIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGF 231
            KI VV   +  +  + S+ QRK  +++ KH  I  + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 231 KPTYS*YFIMLVNDCRSFPLCFR*N 157
           +PTY+ YFI L++D R    C+  N
Sbjct: 95  RPTYTHYFIRLLHDKRLLQKCYTQN 119


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +1

Query: 91  KMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIR-KVKYTQQNF 267
           K++   FK IA   +   F+D  +S   R   T   +  +++   GF     +K +   F
Sbjct: 547 KINTTTFKTIANNKSVDAFLDDCVSFFSRPEMT---QDSQLNASSGFLTNFSLKDSTDRF 603

Query: 268 HDRLS--RIIQEFPKLDDVHPFYADLMNVL 351
           +  LS  ++ + F K+DD +  Y+D+ + L
Sbjct: 604 YKVLSYEKVSERFVKIDDSYITYSDIFSPL 633


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = +1

Query: 211 ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 390
           +S IR    R+ K    +    LSR I +  KLD V PF   +M +L D+ +  + +  L
Sbjct: 437 LSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPF---VMTLLRDQ-YADVRISAL 492

Query: 391 NTARHLIDNV 420
            T   L+ NV
Sbjct: 493 ITITRLVSNV 502


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 114 KDCCSPYS*GLYRHNFIEN 170
           K   SPYS G Y++N IEN
Sbjct: 501 KSSSSPYSRGPYKYNRIEN 519


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 472 KQLKRAALGRMATIMKRQGANLTYLEQVRQHLARXPXSIDPYTRTIIICG 621
           K LKR  LG  AT +   GAN+        H    P   DP  +T+++ G
Sbjct: 53  KILKRTTLGLFATAVVLYGANVYRFRHPDPH---QPLP-DPSKKTLVVLG 98


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 433 VRLLKYGDSLYRCKQLKRAALGRMATIMKRQG 528
           +R + Y D+L+  K L    LG+  T ++R+G
Sbjct: 421 LRHIDYDDTLHSAKSLFYEILGQNNTFLQREG 452


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 196 HKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 288
           H+H+K+SR R  YI+       N  D +++I
Sbjct: 230 HQHWKVSRDRKQYIKNFHNESVNNVDLINKI 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,857
Number of Sequences: 5004
Number of extensions: 53804
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)