Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_H08
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0668 - 4882174-4884204 279 1e-75
07_01_0075 - 558829-560859 276 1e-74
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 41 0.001
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911... 30 1.8
08_02_1310 - 26037025-26038074 29 4.2
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 28 7.4
>06_01_0668 - 4882174-4884204
Length = 676
Score = 279 bits (685), Expect = 1e-75
Identities = 128/185 (69%), Positives = 154/185 (83%)
Frame = +1
Query: 94 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 273
M YNFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYSISRIRQFYMRKVKYTQSNFYE 60
Query: 274 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 453
+LS +I +FP+LDD+HPFY DL++VLY+KDHYKL LGQ+NTAR++I +AKDY+RLLKYG
Sbjct: 61 KLSTVIDDFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120
Query: 454 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARXPXSIDPYTRTIIICGIPKC 633
DSLYRCK LK AALGRM T++KR +L YLEQ+RQH+AR P SIDP TRT++ICG P
Sbjct: 121 DSLYRCKCLKVAALGRMCTVIKRISPSLAYLEQIRQHMARLP-SIDPNTRTLLICGYPNV 179
Query: 634 RKIXF 648
K F
Sbjct: 180 GKSSF 184
>07_01_0075 - 558829-560859
Length = 676
Score = 276 bits (677), Expect = 1e-74
Identities = 127/185 (68%), Positives = 153/185 (82%)
Frame = +1
Query: 94 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 273
M YNFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYAISRIRQFYMRKVKYTQSNFYE 60
Query: 274 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 453
+LS +I +FP+LD +HPFY DL++VLY+KDHYKL LGQ+NTAR++I +AKDY+RLLKYG
Sbjct: 61 KLSTVIDDFPRLDGIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120
Query: 454 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARXPXSIDPYTRTIIICGIPKC 633
DSLYRCK LK AALGRM T++KR +L YLEQ+RQH+AR P SIDP TRT++ICG P
Sbjct: 121 DSLYRCKCLKVAALGRMCTVIKRISPSLAYLEQIRQHMARLP-SIDPNTRTLLICGYPNV 179
Query: 634 RKIXF 648
K F
Sbjct: 180 GKSSF 184
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 40.7 bits (91), Expect = 0.001
Identities = 38/180 (21%), Positives = 80/180 (44%), Gaps = 3/180 (1%)
Frame = +1
Query: 109 FKKIAVVPTAKDFIDIILSKTQRKTPTV-VHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 285
F++I +V A D + K++ PT + K R +G +++ + L
Sbjct: 83 FQRIPMVMPATDILMSAQRKSRNVPPTKGIANIAKRERNKG--AKQLDALMKEISVPLRT 140
Query: 286 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLY 465
+ FPK D+HP+ L+ + + + +Y+ + +++ R I++V K + + SL
Sbjct: 141 YTENFPKRRDLHPYERSLIELTFGEGYYEKVIARVDALRKKINSVGKQHASVC--AKSLT 198
Query: 466 RCKQLKRAALGR--MATIMKRQGANLTYLEQVRQHLARXPXSIDPYTRTIIICGIPKCRK 639
+ + +R + GR + + + L + + L P +DP+ T+ + G P K
Sbjct: 199 KREAEERLSEGRKKLEEAFEHGKWVIDDLVNIAKTLRSMPV-VDPHIPTLCLVGSPNVGK 257
>01_03_0056 +
12089404-12090300,12090429-12090581,12090999-12091157,
12091575-12091734,12092185-12092201,12092682-12092798,
12092914-12093303
Length = 630
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +1
Query: 199 KHYK--ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYK 372
K YK +S G+Y+ KV + +S + FP +D P ++ N L+D+ K
Sbjct: 423 KRYKELLSDSEGYYVPKVIDELSSKKVLMSEFVPGFP-IDKTDPNWS---NFLFDEPTRK 478
Query: 373 LGLGQLNTARHLIDNVAKDYVRLL 444
L AR DY+R++
Sbjct: 479 FNLIDFGAARDFPKRFVDDYLRMV 502
>08_02_1310 - 26037025-26038074
Length = 349
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 343 NVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMA 507
++L + Y+LG +L + + L+DNV + V + Y C +LK+ L +A
Sbjct: 260 HLLAAAERYELGGLKLLSTKKLLDNVTPENVAGIIVCAETYGCPELKKKCLDYLA 314
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = +1
Query: 220 IRGFYIRKVKYTQQNFHDRLSRIIQEFPKLD-DVHPFYADLMNVLYDKDHYKLGLGQLNT 396
+ Y+ +V+ ++ + LSR+ QEF +L +L V ++ LGQL+
Sbjct: 361 LEDLYLSQVQQRKET-EESLSRVQQEFEQLKIQQDEVTVELQRVNEQNENL---LGQLSD 416
Query: 397 ARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMATIM 516
+R + + ++ +LL+ D+ R + R G+M +++
Sbjct: 417 SREHFEWLLSEHDQLLRERDNAVREVEELRQKRGQMLSVL 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,710,292
Number of Sequences: 37544
Number of extensions: 331954
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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