Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_H04
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 160 2e-40
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 138 5e-34
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 123 2e-29
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 122 3e-29
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 113 3e-26
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 108 6e-25
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 97 2e-21
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 92 6e-20
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 75 7e-15
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.33
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 29 0.77
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 1.8
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 26 4.1
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 26 5.4
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 7.2
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 7.2
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 9.5
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 9.5
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 160 bits (388), Expect = 2e-40
Identities = 79/129 (61%), Positives = 100/129 (77%)
Frame = +3
Query: 264 NKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSV 443
N + P SQ Y ++L R LPV++ + +F+++ + +Q IV VGETGSGKTTQIPQ+ V
Sbjct: 54 NFFNDKPFSQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQF-V 112
Query: 444 EFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLK 623
+ + L + +ACTQPRRVAAMSVA+RVA+EMDV LG+EVGY+IRFEDCSGP TLLK
Sbjct: 113 LYDELPHLTNTQ-IACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLK 171
Query: 624 YMTDGMLLR 650
YMTDGMLLR
Sbjct: 172 YMTDGMLLR 180
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 138 bits (335), Expect = 5e-34
Identities = 66/111 (59%), Positives = 86/111 (77%)
Frame = +3
Query: 318 RLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQ 497
R LPV++YK+D ++ +N +Q +++V ETGSGKTTQ+PQ+ E G K + CTQ
Sbjct: 415 RKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKG---NKKICCTQ 471
Query: 498 PRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLR 650
PRRVAAMSVA RVA+EMDV LGQEVGYSIRFE+ + +T++KY+TDGMLLR
Sbjct: 472 PRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLR 522
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 123 bits (297), Expect = 2e-29
Identities = 62/112 (55%), Positives = 82/112 (73%)
Frame = +3
Query: 315 KRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACT 494
+R GLPV++ + F+ ++ +Q +VL+GETGSGKTTQI Q+ E S +K + CT
Sbjct: 506 QREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSD---SKMIGCT 562
Query: 495 QPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLR 650
QPRRVAAMSVA+RVAEE+ +G+EVGY+IRFED + T +KYMTDGML R
Sbjct: 563 QPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQR 614
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 122 bits (295), Expect = 3e-29
Identities = 64/128 (50%), Positives = 86/128 (67%)
Frame = +3
Query: 267 KYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVE 446
K T ++ Y E +R LP + + + ++ +Q +++VGETGSGKTTQ+ Q+ E
Sbjct: 475 KDTEFARTKSYRE---QREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYE 531
Query: 447 FAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKY 626
G + + CTQPRRVAAMSVA+RV+EEM V LG VGYSIRFED +GP T++KY
Sbjct: 532 ----DGYHRNGMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKY 587
Query: 627 MTDGMLLR 650
MTDG+LLR
Sbjct: 588 MTDGVLLR 595
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 113 bits (271), Expect = 3e-26
Identities = 57/116 (49%), Positives = 81/116 (69%)
Frame = +3
Query: 303 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 482
++L +R LP+WE + + + ++ IV+VGETGSGK+TQIPQ+ E +
Sbjct: 88 DILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECP----YAQEGC 143
Query: 483 VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLR 650
VA TQPRRVAA+++A+RVA E LG++VGYSIRF+D + +T +KY+TDGMLLR
Sbjct: 144 VAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLR 199
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 108 bits (260), Expect = 6e-25
Identities = 54/129 (41%), Positives = 80/129 (62%)
Frame = +3
Query: 264 NKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSV 443
N ++ S Y +R+R LP WE + M + Q +V+ GETGSGK+TQ+ Q+ +
Sbjct: 556 NNWSERVKSPSYQLKVREREKLPAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFIL 615
Query: 444 EFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLK 623
+ SG + V CTQPRR++A+S+A+RVA E D +G+EVGYS+ E +TLL+
Sbjct: 616 DHYLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVGKEVGYSVHGEKSISKETLLE 675
Query: 624 YMTDGMLLR 650
+ T G+LLR
Sbjct: 676 FCTTGLLLR 684
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 97.1 bits (231), Expect = 2e-21
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Frame = +3
Query: 303 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 482
E+ RL LP+ + M + + +++ G TGSGKTTQ+PQ+ E S + G
Sbjct: 390 EIQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFEAGFSSPESENPG 449
Query: 483 -VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLR 650
+A TQPRRVAA+S+A+RV+EE+ +V Y IRF+ P T +K+MTDG+LLR
Sbjct: 450 MIAITQPRRVAAVSIAKRVSEEL-TGFSSKVSYQIRFDSTINPDTAIKFMTDGILLR 505
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 92.3 bits (219), Expect = 6e-20
Identities = 48/113 (42%), Positives = 73/113 (64%)
Frame = +3
Query: 309 LRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVA 488
++K+L LP+ +Y+N + + +Q +++G TG GKTTQIPQ+ E S G +
Sbjct: 20 IQKKL-LPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGI---IG 75
Query: 489 CTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLL 647
CTQPRR+ A SV++RV+ E++ G GYSI+F+ +T +KYMTDG+LL
Sbjct: 76 CTQPRRLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILL 128
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 75.4 bits (177), Expect = 7e-15
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Frame = +3
Query: 261 LNKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWS 440
LNK+ S+ + R LP ++ + +N Q +++ G+TG GK+TQIP +
Sbjct: 609 LNKWRQQLESESAEKFKVFRNQLPATMFRETIIDAVNNSQLLIISGDTGCGKSTQIPAFL 668
Query: 441 VEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEM----DVALGQE-VGYSIRFEDCSG 605
+E + + GKA + T+PRR++A+S+A RV++E+ A E VGYS+R +
Sbjct: 669 LENSTKN--GKAVKIYVTEPRRISAISLANRVSQELGGNPPSARSHELVGYSVRLDSKCT 726
Query: 606 PQTLLKYMTDGMLLR 650
P T L Y+T G LR
Sbjct: 727 PLTPLTYVTTGTFLR 741
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 366 LNTHQCIVLVGETGSGKTTQI 428
+ T++ ++LVGETG+GKTT I
Sbjct: 464 VQTNEPLLLVGETGTGKTTTI 484
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 360 RLLNTHQCIVLVGETGSGKTT 422
R L + ++LVG+TG GKTT
Sbjct: 1181 RCLLAKEPVLLVGDTGCGKTT 1201
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 28.7 bits (61), Expect = 0.77
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 357 MRLLNTHQCIVLVGETGSGKT 419
M+ + +QCI++ GE+G+GKT
Sbjct: 120 MKSYHENQCIIISGESGAGKT 140
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 297 YHELLRKRLGLPVWEYKNDFMRLLNT---HQCIVLVGETGSGKTTQIPQWSVEFAAVSGL 467
Y E R L ++ D + +N +Q I++ GE+G+GKT FA+V L
Sbjct: 131 YSEKSRDELDPHLYAIAEDSYKCMNQEHKNQTIIISGESGAGKTVSARYIMRYFASVQAL 190
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/85 (21%), Positives = 38/85 (44%)
Frame = +3
Query: 384 IVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALG 563
++LVG G+GK TQ P ++ ++ L + R+ A+++ ++ +
Sbjct: 6 LILVGPPGAGKGTQAPNIQKKY-GIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSD 64
Query: 564 QEVGYSIRFEDCSGPQTLLKYMTDG 638
V I+ E + P+ ++ DG
Sbjct: 65 DIVTGMIKDEILNNPECKNGFILDG 89
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 282 PHSQRYHELLRKRLGLPVWEYKNDF 356
PHS RYH L LG +NDF
Sbjct: 36 PHSSRYHWQLHSNLGESAVFDENDF 60
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 300 HELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTT 422
H +R R LP+ ND + + I +VG TG+GK+T
Sbjct: 1228 HYSVRYRENLPL--VLNDISVNIKPQEKIGIVGRTGAGKST 1266
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 378 QCIVLVGETGSGKTT 422
+ IVL+GE G+GKTT
Sbjct: 376 EIIVLLGENGTGKTT 390
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +3
Query: 279 LPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCI--VLVGETGSGKTTQI 428
LPH L G + EY N F+R L QC +L G+ G T +
Sbjct: 940 LPHHIFLSSALNVTGGATLHEYGNTFIRQLEYSQCTFKLLDGDKEVGSKTML 991
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.0 bits (52), Expect = 9.5
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Frame = +3
Query: 339 EYKNDFMRLLNTHQCIV-------LVGETGSGKTT--QIPQWSVEFAAVSG--LGKAKGV 485
+ K + RLLN Q V L+GE+G+GKTT + V+ V+G L +G+
Sbjct: 892 QIKGEHRRLLNGVQGFVVPGKLTALMGESGAGKTTLLNVLAQRVDTGVVTGDMLVNGRGL 951
Query: 486 ACTQPRRVAAMSVAQRVAEEMDVALGQE-VGYSIRF 590
T RR ++ DV +G+ V ++RF
Sbjct: 952 DSTFQRRTG-------YVQQQDVHIGESTVREALRF 980
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,478
Number of Sequences: 5004
Number of extensions: 51350
Number of successful extensions: 175
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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