Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_G22
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    66   1e-12
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    28   0.59 
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    25   3.2  
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch...    24   9.7  

>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 66.5 bits (155), Expect = 1e-12
 Identities = 24/59 (40%), Positives = 35/59 (59%)
 Frame = +1

Query: 106 SNLTVXFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWVDACES 282
           +  T  FCNHEKS    +D+      + C++C +  Q     LS PIDVY+DW+DAC++
Sbjct: 21  TTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDA 79


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 64   GSHHQNERLPRHWISNLTVXFCNHEK 141
            G  HQN +   HW+S  T    N E+
Sbjct: 1144 GPDHQNTKEAEHWLSEFTALAVNQER 1169


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 190 CRVCLEDFQTTTNVLSEPIDVYND 261
           C+V  ++F   ++V++EP+D+  D
Sbjct: 273 CKVLRKEFPNKSDVIAEPVDITVD 296


>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 139 KSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWV 267
           K  EVK DR R+T   + R+ LE    T       I+  N W+
Sbjct: 98  KEREVKTDRQRDTGSGEQRIRLERDTETLYQSQLRINQVNGWM 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,978
Number of Sequences: 5004
Number of extensions: 21397
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)