Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_G14
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 30 0.25
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 1.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 1.8
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 27 1.8
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.1
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 26 5.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.5
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 9.5
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 25 9.5
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 550 LGQEHINLVGNDQNLGPVVMSLKKEHIAGQEQT 648
LG + + LVG+ Q LGPVVM+ KK +A Q+
Sbjct: 580 LGAKQVVLVGDHQQLGPVVMN-KKVALASLSQS 611
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 436 PHDGEEVAPRPQP-GTPRQSNRRHNIDTDETATYYRRYFLG 555
P DG P+P P G PR+ R I D Y R FLG
Sbjct: 374 PADG---VPKPTPDGFPRRFERDPTIPPDSIKVYSRTLFLG 411
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.5 bits (58), Expect = 1.8
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Frame = +1
Query: 217 PDQKEVTRPENRHSVP-VGSATRDKQYSGLPPSPAVACQASQRLLEEILSKPGTPPTIVL 393
P+ V +P VP V S + +P +P+V + ++ E+ S P P V+
Sbjct: 629 PEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVV 688
Query: 394 PPSGGYWVDGVDD-SPHDGEEVAPRPQPGTPRQSNRRHNIDTDETATYYRRYFLGQEH-I 567
P +G V PHD + PQ G ++ H T A Y +E+ I
Sbjct: 689 PEAGQLNEPVVPPLPPHDETQ---EPQVGGDVKAT-EHTQPTKTPAIVIYDYSPEEENEI 744
Query: 568 NLVGNDQ 588
LV N+Q
Sbjct: 745 ELVENEQ 751
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -2
Query: 229 LSGRALYWSEYRSDPSTVALP*PPDEPTSLVYFSHWTVHRRHHIKQCSLPNFSRFHLYH 53
L G LYWS+ ++DP A+ P ++ ++ FS W + + + C L + H+Y+
Sbjct: 1176 LPGFRLYWSDEQNDPDLSAVL-PYNK--FVLLFSKWHKYLTSYFESCLL-STEYMHIYN 1230
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 304 PPSPAVACQASQRLLEEILSKPGTPPTIVLPPSGGYWVDGVDDSPHD 444
PPSP + + +R +S GTP T + Y VDD P D
Sbjct: 130 PPSPKMVVDSIRRAYR--VSMTGTPGTCYVDLPANYIESTVDDFPKD 174
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 367 PGTPPTIVLPPSGGYWVDGVDDSPHDGEEVAP 462
P PT+ PS G ++ +D P G E+ P
Sbjct: 434 PSRQPTVRATPSTGKQIEPPNDEPSIGNELLP 465
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 271 SATRDKQYSGLPPSPAVACQASQRLLEEILSKPGTPPTIVLPPSGG 408
S T + G P V C+ S + L+ + G P ++ +P S G
Sbjct: 1005 SETTFQLTDGAKKDPKVVCEHSVKTLDLVSEALGRPYSVEIPGSNG 1050
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +1
Query: 247 NRHSVPVGSATRDKQYSGLPPSPAVACQASQRLLEEILSKPGTPPTIVLPPSG 405
NR P+G+ + + PP P S L + S P PP P +G
Sbjct: 321 NRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 295 SGLPPSPAVACQASQRLLEEILSKPGTPPTIVLPPSGGYWVDGVDDSPHDGEEVAPRPQP 474
S L P + + Q+LL + S P PP +++P + +P G P P P
Sbjct: 711 SPLLPDVSDTVEEQQKLL--LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Query: 475 G 477
G
Sbjct: 769 G 769
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 305 HHLQLLLVRPVRGS 346
HH+Q LL RPV G+
Sbjct: 42 HHMQQLLTRPVEGT 55
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = -3
Query: 387 YGRWGSRLRKNLFQEPLTGLTSNSWRWWKS*I-LFVSSG-----TSHGHRVTV 247
+G S +R F+ P + SWR W+ L VS+ T GHR+T+
Sbjct: 10 FGEKKSTVRSVTFKAPKSNYDLTSWRIWEQAFRLNVSNSKKCFDTISGHRITL 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,008
Number of Sequences: 5004
Number of extensions: 73472
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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