Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_G14
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.    80   2e-15
AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical ...    80   2e-15
AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical ...    77   1e-14
Z74045-4|CAA98554.2|  924|Caenorhabditis elegans Hypothetical pr...    35   0.044
Z74032-11|CAA98469.2|  924|Caenorhabditis elegans Hypothetical p...    35   0.044
Z81035-1|CAB02735.1|  221|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z49130-2|CAA88966.1|  396|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81460-1|CAB03830.2|  215|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U80955-5|AAG01559.2|  573|Caenorhabditis elegans Ferm domain (pr...    28   5.0  
U80955-4|ABB51180.1|  589|Caenorhabditis elegans Ferm domain (pr...    28   5.0  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    28   5.0  
U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.
          Length = 741

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 47/138 (34%), Positives = 75/138 (54%)
 Frame = +1

Query: 220 DQKEVTRPENRHSVPVGSATRDKQYSGLPPSPAVACQASQRLLEEILSKPGTPPTIVLPP 399
           D +    PE  H+   G   +++Q        AV  Q ++ ++ E+L+K G  P IVLP 
Sbjct: 94  DDQRCEMPERTHNPTSGH--QNEQTHQKTNGSAVHNQLTRNIMNEVLTKVGPYPQIVLP- 150

Query: 400 SGGYWVDGVDDSPHDGEEVAPRPQPGTPRQSNRRHNIDTDETATYYRRYFLGQEHINLVG 579
           S G+W+DGV+   H  ++V           S  R  ++TDET+  YRR+F G+EH +   
Sbjct: 151 SNGFWMDGVNQQHHMDDQVN-----NMNVNSCARFKLETDETSHCYRRHFFGREHHDFFA 205

Query: 580 NDQNLGPVVMSLKKEHIA 633
           ND  +GP+V+S++ E I+
Sbjct: 206 NDPIVGPLVLSVRTEVIS 223


>AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical
           protein F53A10.2a protein.
          Length = 742

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 47/138 (34%), Positives = 75/138 (54%)
 Frame = +1

Query: 220 DQKEVTRPENRHSVPVGSATRDKQYSGLPPSPAVACQASQRLLEEILSKPGTPPTIVLPP 399
           D +    PE  H+   G   +++Q        AV  Q ++ ++ E+L+K G  P IVLP 
Sbjct: 95  DDQRCEMPERTHNPTSGH--QNEQTHQKTNGSAVHNQLTRNIMNEVLTKVGPYPQIVLP- 151

Query: 400 SGGYWVDGVDDSPHDGEEVAPRPQPGTPRQSNRRHNIDTDETATYYRRYFLGQEHINLVG 579
           S G+W+DGV+   H  ++V           S  R  ++TDET+  YRR+F G+EH +   
Sbjct: 152 SNGFWMDGVNQQHHMDDQVN-----NMNVNSCARFKLETDETSHCYRRHFFGREHHDFFA 206

Query: 580 NDQNLGPVVMSLKKEHIA 633
           ND  +GP+V+S++ E I+
Sbjct: 207 NDPIVGPLVLSVRTEVIS 224


>AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical
           protein F53A10.2c protein.
          Length = 811

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 41/106 (38%), Positives = 64/106 (60%)
 Frame = +1

Query: 316 AVACQASQRLLEEILSKPGTPPTIVLPPSGGYWVDGVDDSPHDGEEVAPRPQPGTPRQSN 495
           AV  Q ++ ++ E+L+K G  P IVLP S G+W+DGV+   H  ++V           S 
Sbjct: 194 AVHNQLTRNIMNEVLTKVGPYPQIVLP-SNGFWMDGVNQQHHMDDQVN-----NMNVNSC 247

Query: 496 RRHNIDTDETATYYRRYFLGQEHINLVGNDQNLGPVVMSLKKEHIA 633
            R  ++TDET+  YRR+F G+EH +   ND  +GP+V+S++ E I+
Sbjct: 248 ARFKLETDETSHCYRRHFFGREHHDFFANDPIVGPLVLSVRTEVIS 293


>Z74045-4|CAA98554.2|  924|Caenorhabditis elegans Hypothetical
           protein T27F2.2 protein.
          Length = 924

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 532 YYRRYFLGQEHINLVGNDQNLGPVVMSLKKEHIAGQE 642
           YYR  F+ + HI  +G D  LGP+ +S+ +E +  +E
Sbjct: 187 YYRHCFISKNHIEYLGMDDILGPISISMVREIVDRKE 223


>Z74032-11|CAA98469.2|  924|Caenorhabditis elegans Hypothetical
           protein T27F2.2 protein.
          Length = 924

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 532 YYRRYFLGQEHINLVGNDQNLGPVVMSLKKEHIAGQE 642
           YYR  F+ + HI  +G D  LGP+ +S+ +E +  +E
Sbjct: 187 YYRHCFISKNHIEYLGMDDILGPISISMVREIVDRKE 223


>Z81035-1|CAB02735.1|  221|Caenorhabditis elegans Hypothetical
           protein C15H11.1 protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 241 PENRHSVPVGSATRDK-QYSGLPPSPAVACQASQ 339
           P+  H + V  +T ++ +YS LPP+P VA    Q
Sbjct: 111 PQGEHKLRVTPSTEEQMEYSALPPTPTVASSIKQ 144


>Z49130-2|CAA88966.1|  396|Caenorhabditis elegans Hypothetical
           protein T06D8.3 protein.
          Length = 396

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 588 LIVAYQINMLLAKEISPVVCGGFIGVDVVPSIGLPRGPRLRSWRDFLAIMWTI 430
           L + Y IN+  A  + P++  GF+G+ +V S     G +   WRD + + W I
Sbjct: 234 LYIYYMINLRGAPLLRPLLIFGFMGLCIVDSFSRINGYK-NHWRD-IWVAWVI 284


>Z81460-1|CAB03830.2|  215|Caenorhabditis elegans Hypothetical
           protein C04A11.1 protein.
          Length = 215

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 301 LPPSPAVACQASQRLLEEILSKPGTPPTIVLPPS 402
           +PP    + ++  R+L     +PG+ PTIVLPPS
Sbjct: 133 VPPYKPRSGKSGGRVLRIAPDRPGSIPTIVLPPS 166


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +1

Query: 262 PVGSATRDKQYSGLPPSPAVACQASQRLLEEILSKPGTPPTIVLPPSGGYWVDG-VDDSP 438
           PVG A       G PP P +     +  +  + S PG PP    PP   +  +G V ++ 
Sbjct: 543 PVGMAN-----GGPPPPPPLPLDLLKGAVAGLKSVPGGPPPPPPPPPPSFMFNGKVPNAF 597

Query: 439 HDGEEVAPRPQPGTPRQS 492
             G   +P   PG  + +
Sbjct: 598 SPGTSTSPVLSPGVVKSA 615


>U80955-5|AAG01559.2|  573|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 2,
           isoform a protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 244 ENRHSVPVGSATRDKQYSGLPPSPAVACQASQRLLEEILSKPGTPPTIVLPP 399
           ++   +P  S+  +++ S  PP PAV  Q       +       PP+ ++PP
Sbjct: 511 QSNSKIPRMSSASEQRKSSQPPQPAVRMQTQFEEPRKYSQNGCAPPSRIVPP 562


>U80955-4|ABB51180.1|  589|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 2,
           isoform b protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 244 ENRHSVPVGSATRDKQYSGLPPSPAVACQASQRLLEEILSKPGTPPTIVLPP 399
           ++   +P  S+  +++ S  PP PAV  Q       +       PP+ ++PP
Sbjct: 527 QSNSKIPRMSSASEQRKSSQPPQPAVRMQTQFEEPRKYSQNGCAPPSRIVPP 578


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 208 STTPDQKEVTRPENRHSVPVGSATRDKQYSGLPPSPAVACQASQRLLE-EILSKPGTPPT 384
           S+TP QK+       + +P    ++D   +  PP P  A + +Q   + ++ + P  PP+
Sbjct: 253 SSTPQQKQRLADGANNQIPPTQKSQDSVQAVQPPPPRPAARNAQFASDADLFAVPKAPPS 312


>U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical
           protein T17H7.1 protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +3

Query: 150 GSSGGHGSATVEGSDRYSDQYNARPERGYPAGEPSLGARGK 272
           G   G GS    G D  S   +A P R  P G   LG RG+
Sbjct: 554 GPDFGPGSQGGRGQDSDSGSQDAFPGRRGPGGPGGLGGRGQ 594


>Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical
           protein ZK337.2 protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +1

Query: 220 DQKEVTRPENRHSVPVGSA-TRDKQYSGLPPSPAVACQASQRLLEEILSKPGTPPTIVLP 396
           D+  V  P    + PV  A T    +   PP+  ++  A   + E+  SKP + PT+ L 
Sbjct: 5   DEASVAEPTVVVATPVAVAVTAPATHPRKPPALVISTIACPTIYEQAPSKPAS-PTMPLS 63

Query: 397 PSGGYWVD 420
           P  G   D
Sbjct: 64  PYEGITAD 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,008,767
Number of Sequences: 27780
Number of extensions: 465615
Number of successful extensions: 1084
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)