Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_G14
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.84 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          25   0.84 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.0  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   6.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.0  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 418 DGVDDSPHDGEEVAPRPQPGTPRQSNRRHNIDTDETATYYRRYFLGQEHI 567
           DG DD   D E    +P  G    ++  H  +TD+   YY   F G+  I
Sbjct: 396 DGDDDDDDDVEAANGKPAEGM--LTDVFHVQETDKYDAYYGNRFSGEYEI 443


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -2

Query: 565 YAPGQGNISCSM-WRFH 518
           Y P  GN+SCS+ W  H
Sbjct: 40  YGPEAGNVSCSVSWEVH 56


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
 Frame = -2

Query: 451 PRHHVDYRQLRLPSNLHLEVEL--WSVGFQASKESL-------PGAS-DWPDKQQLE 311
           P+H    R + +  N HL VEL  +     A + ++       PG S DWP   Q++
Sbjct: 541 PKHDHQGRPISISKNQHLFVELDQFIQNLHAGENTIIRNSQQAPGQSPDWPSTSQIQ 597



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 454 LPRHHVDYRQLRLPSNLHLE 395
           LP+HH+D R ++   N+ ++
Sbjct: 162 LPQHHLDSRVIQEAQNIAIQ 181



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = -3

Query: 618 LQRHDDRSQILIVAYQINMLLAKEISPVVCGGFIGVDVVPSIGLPRGPRLRSWRDFLAIM 439
           L   D + Q++ V     +    +IS V  G    V+V+P   +    ++++ R++ A +
Sbjct: 662 LTYQDQQYQVVSVEQYQQLKEQGQISQVGGGIQQNVEVLPENLVNAQQQVQAVRNYYANL 721

Query: 438 WTIVNSVYPVT 406
           +T  +  YP T
Sbjct: 722 YTKYHGQYPNT 732


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 21/79 (26%), Positives = 28/79 (35%)
 Frame = +1

Query: 151 VRQAVMGVLRWKDLTGIRTSTTPDQKEVTRPENRHSVPVGSATRDKQYSGLPPSPAVACQ 330
           V + +MG  RWK       S T   + +T   +    P  S++ D       P P    Q
Sbjct: 36  VAEELMGRRRWKQYQDTLYSGTRSSESLTAQAHHRLYPAFSSSCD-------PVPGNLEQ 88

Query: 331 ASQRLLEEILSKPGTPPTI 387
              R L    S    P TI
Sbjct: 89  IGSRPLHPPASSTSLPATI 107


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 532 YYRRYFLGQEHINLVGNDQNLGP 600
           + +RYF G++ ++ V  D+ L P
Sbjct: 300 HQKRYFFGRDSVDHVDFDEFLPP 322


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 256 SVPVGSATRDKQYSGLPPSPAVACQASQRLLEEILSKPGTP---PTIVLPP 399
           SVPVGSA        L P  A A + + R  ++ L+   +P   P+  L P
Sbjct: 56  SVPVGSAVAGTAGGALFPGMAAAGKGAAR-SDDWLANANSPVGSPSAALQP 105


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 565 YAPGQGNISCSMWRFHRCRC 506
           Y P   N  CS+ R +R RC
Sbjct: 52  YRPCTKNQQCSILRINRNRC 71


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 565 YAPGQGNISCSMWRFHRCRC 506
           Y P   N  CS+ R +R RC
Sbjct: 101 YRPCTKNQQCSILRINRNRC 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,590
Number of Sequences: 438
Number of extensions: 5587
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)