Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_F19
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0386 + 17448803-17449067,17449704-17449708                       28   4.7  
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553...    28   6.2  
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391...    27   8.2  
01_07_0369 - 43111835-43111882,43112172-43112245,43112670-431127...    27   8.2  

>10_08_0386 + 17448803-17449067,17449704-17449708
          Length = 89

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 205 RGARSVRRAGGTSPSRILTRDDAEIGDAIDGQVRGWRAAWI 327
           RG R   RAG TSP   + R+ A + + IDG      AAWI
Sbjct: 29  RGVRHRWRAGPTSPPPAVARNHAPMAE-IDGDAAA--AAWI 66


>11_01_0678 -
           5534879-5534883,5535430-5535529,5535638-5535799,
           5536000-5536966,5537444-5537561,5538682-5538871,
           5538952-5539107,5539296-5540315
          Length = 905

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 203 YAAPDPSGVLEGRRPRGFLLEMMRRLVMRST 295
           +  PD   + +G RP+G  LEM +R + RS+
Sbjct: 502 HRGPDARRLFDGMRPQGKTLEMGKRALPRSS 532


>04_04_1120 +
           31037811-31038813,31038903-31038991,31039094-31039163,
           31039270-31039353,31039452-31039528,31039631-31039712,
           31039847-31039929,31040270-31040333,31040435-31040566,
           31040674-31040777,31040901-31040996,31041144-31041251
          Length = 663

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 200 RYAAPDPSGVL-EGRRPRGFLLEMMRRLVMRSTA 298
           RY APDP G L  G   R  +LE +R+L +   A
Sbjct: 262 RYCAPDPDGDLAAGYSGRDVVLENLRQLCVHRVA 295


>01_07_0369 -
           43111835-43111882,43112172-43112245,43112670-43112754,
           43112930-43113022,43113099-43113163,43114051-43114142,
           43114240-43114527,43114642-43114706,43115421-43115502,
           43115578-43115669,43116169-43116301,43116380-43116501,
           43116624-43116725,43116853-43116892,43117032-43117103,
           43117241-43117320,43117444-43117818
          Length = 635

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 192 TLHKNKYYLIFMFTLHSEYVRTLKSSSIVC 103
           TLH +  +L+  F L SE  RT +S S +C
Sbjct: 319 TLHPDDIFLLSNFILSSESFRTSESFSPIC 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,705,715
Number of Sequences: 37544
Number of extensions: 298690
Number of successful extensions: 720
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)