Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_F19
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   2.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.8  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   5.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.7  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   8.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 263 LVRILEGDVPPARRTDRAPR 204
           L+  L+  +PP+R TD+A R
Sbjct: 228 LIEALDAILPPSRPTDKALR 247


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 263 LVRILEGDVPPARRTDRAPR 204
           L+  L+  +PP R TD+A R
Sbjct: 171 LIEALDAILPPTRPTDKALR 190


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 263 LVRILEGDVPPARRTDRAPR 204
           L+  L+  +PP R TD+A R
Sbjct: 228 LIEALDAILPPTRPTDKALR 247


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 460  HSRSGQSSLPR 492
            HSRSG  S+PR
Sbjct: 1772 HSRSGSQSMPR 1782


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 263 LVRILEGDVPPARRTDRA 210
           L+  L+  +PP R TD+A
Sbjct: 155 LIEALDAILPPTRPTDKA 172


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 282  TNLRIISSKNPRGRRPSSTP 223
            +NLR+  SKN +GR    TP
Sbjct: 966  SNLRLTFSKNVQGRVGFVTP 985


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 5/22 (22%), Positives = 15/22 (68%)
 Frame = +3

Query: 87  QLVTKNKLYYWISVSEHILSVV 152
           +++ ++ + YW+   +HI+ +V
Sbjct: 96  EMLVRSAIKYWVERHKHIVRLV 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,560
Number of Sequences: 438
Number of extensions: 2616
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)