Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_F17
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.4
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 27 2.4
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.4
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 27 3.1
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 26 4.1
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 4.1
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 4.1
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.2
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 9.5
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 25 9.5
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 1.4
Identities = 8/34 (23%), Positives = 19/34 (55%)
Frame = -2
Query: 592 YFFWSTSFLYFMARCYRYLLVLYFQLHDFSMCIF 491
+F+W F +F + C R+ + ++ +D ++ F
Sbjct: 74 FFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPF 107
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 328 GTGVGIPVMEMFFCSRRLRC*HRQQLEAVS 417
G G+G P+ + C+R L H++ L AV+
Sbjct: 87 GPGIGAPLNSVALCARMLSLIHKKPLVAVN 116
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = -2
Query: 649 FGFFTFFSGWYSXQVILLEYFFWSTSFLYFMARCYRYLLVLYFQLHDFSMC 497
FG F W WST +F + C R ++YF ++ + +C
Sbjct: 56 FGAIGIFFAWKKKLSWEHLVLLWSTIDAFF-SMCLRSCTIIYFSMNPYMLC 105
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +2
Query: 371 REGSAVSTDNSWKLYQQWCRMPEAQRNAWITAGQNVQSLSKYAHAKVMELKVEDQQVPVT 550
R S S D+ L +MPE Q+N + G++ Q++ ++ K D V
Sbjct: 439 RYNSLNSPDDLISLEDYITKMPEHQKNIYFITGESKQAVENSPFLEIFRAKKFDVLFMVD 498
Query: 551 P 553
P
Sbjct: 499 P 499
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -2
Query: 187 SIFKCSRIFGKFIWISRYHLFRSFTLFHRCHFLKSTK 77
S+ KC IFG+F+ +S + + + L+ + F+K+ K
Sbjct: 8 SVKKCIDIFGEFLLVSIHCILYARRLYPQDLFIKARK 44
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 131 PLQEFHSLP*MSFFKIYQNNFTK--NNLHMQREMLQ 30
P+Q+ S+P IYQN K + HMQ++ Q
Sbjct: 227 PMQKLQSMPPARLISIYQNQIQKFRSLQHMQQQQQQ 262
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 362 NIS-ITGMPTPVPYFHYYPLLGTFLNNWYLLYVL 264
N+S I G+P P F Y +L T+ + +LLYVL
Sbjct: 182 NLSDIPGLPQPGDGFLYLYVLFTYFISIFLLYVL 215
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 586 FWSTSFLYFMARCYRYLLVLYFQL 515
F FLY +A CY YL+ Y ++
Sbjct: 454 FLGWGFLYVLAVCYSYLVDCYHEM 477
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 381 PLLAQTTAGSCI--SSGAGCQKHNVMPGSQLDRMYSHYLNMHMLKSW 515
PLL T A I SS A K +P Q Y +N +M+KSW
Sbjct: 1973 PLLLATHASHLITTSSIAASLKGEDIPSIQRLYCYEGPINNYMIKSW 2019
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -3
Query: 327 LLSLLSLTGDFPEQLVPSLCSLNSS---TKW 244
L LS +FP L PSL +L SS TKW
Sbjct: 413 LKQFLSEISNFPNSLSPSLLALLSSPYFTKW 443
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 341 AFLLWKCSSAREGSAVSTDNS 403
A L+W S R+G+ VS D+S
Sbjct: 205 AALIWAVKSLRDGTIVSADSS 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,457
Number of Sequences: 5004
Number of extensions: 57122
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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