Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_F17
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0542 + 4002542-4003119,4004347-4004404,4004518-4004835,400...    29   4.3  
12_01_1026 - 10525744-10526018,10528104-10528332                       27   9.9  
12_01_0607 - 5001490-5001552,5001584-5001895,5002002-5002004           27   9.9  
10_08_0099 + 14786494-14787045                                         27   9.9  

>07_01_0542 +
           4002542-4003119,4004347-4004404,4004518-4004835,
           4005201-4005446,4005550-4005648,4005912-4006097,
           4006204-4006401,4006521-4006596,4006721-4007637
          Length = 891

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 652 TFGFFTFFSGWYSXQV-ILLEYFFWSTSFLYFMARCYRYLLVLYFQLHDFSMCIF 491
           ++GFF     W   +V IL         F YF  RC + + V  F +H  S C +
Sbjct: 172 SYGFFGILRLWRLHRVGILFARLEKDRKFSYFWVRCVKLVCVTLFAVH-CSACFY 225


>12_01_1026 - 10525744-10526018,10528104-10528332
          Length = 167

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 359 CSSAREGSAVSTDNSWKLYQQWCRMPEAQRN 451
           C +  E    S +  W LYQ+WC   + +R+
Sbjct: 82  CFAYDEKDLESEEAVWALYQRWCSFHDIERD 112


>12_01_0607 - 5001490-5001552,5001584-5001895,5002002-5002004
          Length = 125

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 305 VRDSN-ESKAQVWAFLLWKCSSAREGSAVSTDNSWKLYQQWCRMP 436
           +RDS+ +     W F+  +CSSA E   ++     KL  +W +MP
Sbjct: 62  IRDSSGKVLLSSWRFIR-RCSSALESELLACLEGLKLAVEWIKMP 105


>10_08_0099 + 14786494-14787045
          Length = 183

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 356 KCSSAREGSAVSTDNSWKLYQQWCRMP--EAQRNAWITAGQNVQSLSK 493
           +CSSA +  A++     +L   W  MP      NA + AG N+   S+
Sbjct: 104 RCSSATQAEALACLEGVRLATNWIHMPIILESDNADVVAGLNITQASR 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,920,867
Number of Sequences: 37544
Number of extensions: 367282
Number of successful extensions: 908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)