Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_F17
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72508-1|CAA96641.1|  342|Caenorhabditis elegans Hypothetical pr...    29   2.2  
X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.    29   3.8  
U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory ...    29   3.8  
U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.        29   3.8  
U61945-3|AAB03126.2|  451|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AC025727-3|AAG23386.1|  228|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z72508-1|CAA96641.1|  342|Caenorhabditis elegans Hypothetical
           protein F28H7.1 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 199 HLFMSIFKCSRIFGKFIWISRYHLFRSFTLFH 104
           H F+  F+CS I G +  +  + L+R F LF+
Sbjct: 88  HQFIIAFRCSLISGAYAVLHSHFLYRFFVLFN 119


>X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 336 CGHSCYGNVLLLEKAPLLA-QTTAGSCISSGAGCQKHNVMPGSQLDRMYSHYLNMHML 506
           C  S Y       K P L+ Q   GSC  +   C KH    G+ ++  Y   LN  ML
Sbjct: 374 CRQSIYSVTYSPAKWPSLSLQIQLGSCNGTAVECNKHYKENGAMVEVFYEQ-LNFEML 430


>U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory
           abnormality protein4 protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 336 CGHSCYGNVLLLEKAPLLA-QTTAGSCISSGAGCQKHNVMPGSQLDRMYSHYLNMHML 506
           C  S Y       K P L+ Q   GSC  +   C KH    G+ ++  Y   LN  ML
Sbjct: 644 CRQSIYSVTYSPAKWPSLSLQIQLGSCNGTAVECNKHYKENGAMVEVFYEQ-LNFEML 700


>U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 336 CGHSCYGNVLLLEKAPLLA-QTTAGSCISSGAGCQKHNVMPGSQLDRMYSHYLNMHML 506
           C  S Y       K P L+ Q   GSC  +   C KH    G+ ++  Y   LN  ML
Sbjct: 644 CRQSIYSVTYSPAKWPSLSLQIQLGSCNGTAVECNKHYKENGAMVEVFYEQ-LNFEML 700


>U61945-3|AAB03126.2|  451|Caenorhabditis elegans Hypothetical
           protein C49C8.5 protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = +2

Query: 293 GKSPVRDSNESKAQVWAFLLWKCSSAREGSAVSTDNSWKLYQQWCRMPEAQRNAWITAGQ 472
           G +PV    + K    A+ + + S  REGS ++ D  +  Y  W       +N W+    
Sbjct: 211 GSTPVSVYCDRKNSAGAYTIIQ-SRGREGSNITFDIPFANYSDWFGESGVGKNFWLGL-D 268

Query: 473 NVQSLSKYAHAKVMELKVE 529
           N+ +LS   + K   L+++
Sbjct: 269 NMNNLS--TNGKTYSLQID 285


>AC025727-3|AAG23386.1|  228|Caenorhabditis elegans Hypothetical
           protein Y73E7A.5 protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 196 LFMSIFKCSRIFGKFIWISRYHLFRSFTLFHRCHFLK 86
           +F  IF   +I G    +S Y    S  LF +CHFLK
Sbjct: 1   MFQHIFIKFQIIGDIFRLS-YQSALSHPLFRKCHFLK 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,560,962
Number of Sequences: 27780
Number of extensions: 332569
Number of successful extensions: 967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)