Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_F17
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.48 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   3.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 390 LTAEPS---RAEEHFHNRNAHTCALLSLLSLTGD 298
           + AEP    +A    HNRN  TC +    +L+GD
Sbjct: 697 IEAEPQPIGKALSKCHNRNVTTCNMFRKTNLSGD 730


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = -3

Query: 399 LSVLTAEPSRAEEHFHNRNAHTCALLSLLSLTGDFPEQLVPSLCSLNSSTKWN 241
           +++++A  +R+E+      AH  AL           E   P+ C   +   WN
Sbjct: 722 VAIVSASTARSEQFLCRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWN 774


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 582 GLXRFFISWPGVTGTCWSSTFNSMTLA 502
           GL +  IS  G    CW+ T NS+  A
Sbjct: 226 GLFQGGISISGTALNCWTQTENSLEKA 252


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 582 GLXRFFISWPGVTGTCWSSTFNSMTLA 502
           GL +  IS  G    CW+ T NS+  A
Sbjct: 97  GLFQGGISISGTALNCWTQTENSLEKA 123


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 435 GIRHHC*YSFQLLSV-LTAEPSRAEEHFHNRNAHTCAL 325
           G+ + C    + LS  LT +  + ++HF   N+  CAL
Sbjct: 369 GVCYTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCAL 406


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 582 GLXRFFISWPGVTGTCWSSTFNSMTLA 502
           GL +  IS  G    CW+ T NS+  A
Sbjct: 226 GLFQGGISISGTALNCWTQTENSLEKA 252


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 589 FFWSTSFLYFMARCYRYLLVLYFQLHDFSMCIF 491
           FF   SF +  A   ++ +V YF  +    C F
Sbjct: 278 FFVFLSFAFIFATIIQFAVVHYFTKYGSGECYF 310


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 353 WKCSSAREGSAVSTDNSWKLYQQ 421
           + CS  RE  +   +NS++ Y++
Sbjct: 272 YSCSREREQKSYKNENSYRKYRE 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,637
Number of Sequences: 438
Number of extensions: 3925
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)