Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_F16
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    71   1e-12
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278...    64   9e-11
03_02_0673 - 10328994-10329281                                         36   0.037
03_05_1161 - 30831043-30831151,30831641-30831759,30831880-308319...    28   7.4  

>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
 Frame = +1

Query: 166 KVQLSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQHG 342
           KV ++++YES C  S  F++  L       L D +DL L+P+G A  + +G    + +HG
Sbjct: 31  KVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLSLVPYGNAR-VKDGKISCQVEHG 89

Query: 343 PPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPVRECV 522
             ECF N ++ C ++         +  Y   ++      R    C  K N+   PV +C 
Sbjct: 90  SEECFLNTVEACAIDAWPDLRVHFRFIYCVEDLVVNHKQREWESCFGKLNLDPKPVTDCY 149

Query: 523 YLGPGTLLQLDSERLTKLVNP--KFIPTIVLDG 615
               G  L L   R T  + P  K++P +V+DG
Sbjct: 150 KGERGHQLSLKYGRQTDALQPPHKYVPWVVVDG 182


>01_06_1209 +
           35427160-35427318,35427436-35427501,35427737-35427877,
           35428342-35428434,35428530-35428646,35428890-35429054
          Length = 246

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 7/154 (4%)
 Frame = +1

Query: 175 LSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQHGPPE 351
           +SV+YE+ C     F++  L       L   +DL+L+PFG      +G     CQHG  E
Sbjct: 1   MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFGNGRVSPDGS--ITCQHGEEE 58

Query: 352 CFGNLIQDCTL----NEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPVREC 519
           C  N I+ C +    +  + +  ++ +E+LA   +  A       C  ++ +   PV +C
Sbjct: 59  CQLNAIEACVIRLWPDAEQHFPFINCIEHLALTQKWNAWQ----SCFQETGLASQPVMDC 114

Query: 520 VYLGPGTLLQLDSERLTKLVNP--KFIPTIVLDG 615
              G GT LQL     T  + P  +F+P + ++G
Sbjct: 115 YNSGYGTQLQLQYAAETNALQPPHQFVPWVTVNG 148


>03_02_0673 - 10328994-10329281
          Length = 95

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 166 KVQLSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQ 336
           KV L+++YE+ C     FI+  L       + D +DL+L+P+G A  +    +   CQ
Sbjct: 38  KVPLALYYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNAHVV-GANNTISCQ 94


>03_05_1161 -
           30831043-30831151,30831641-30831759,30831880-30831906,
           30832117-30832158,30832293-30832392,30832481-30832545,
           30832619-30832694,30832878-30832939,30833248-30833253,
           30834704-30834782,30834890-30834957
          Length = 250

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 179 RFFMKALALTANTLYWSNYIRLYINLKTISTCSSYLLG 292
           +FF+    ++AN  +   Y +L   ++TI  C  +L+G
Sbjct: 86  QFFLAIFQISANGNWCHEYRKLKAKVETIQKCQKHLMG 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,498,069
Number of Sequences: 37544
Number of extensions: 398736
Number of successful extensions: 946
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)