Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_F14
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.1  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 211 DWVPILAKAGFDFHHSRXQFCYDVQMVAYKQQ 306
           +W+ +    G+ FH  R QF Y  Q   YKQQ
Sbjct: 170 NWLSVFNGTGWTFHEGRKQF-YFHQF--YKQQ 198


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -1

Query: 392 QPQLVFGF----GY*RPYLLHQDLYGMLVANWLC 303
           + Q  FGF    GY  P +L ++ YG  V  W C
Sbjct: 65  EAQAWFGFAGTPGYLSPEVLKKEPYGKPVDIWAC 98


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -1

Query: 143 LFKILRKSFSV--YSIWESTVIPLYLSP 66
           L ++LR S  V   S WE   IPLY  P
Sbjct: 216 LVRLLRLSRLVRYVSQWEEVYIPLYQQP 243


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 204  FYIHFKPYAALILLGP 157
            FY+  +P A +IL+GP
Sbjct: 958  FYMPSEPKAPMILVGP 973


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,953
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)