Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_F13
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    73   4e-14
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.2  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    27   2.2  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   3.8  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   6.7  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 38/87 (43%), Positives = 58/87 (66%)
 Frame = +3

Query: 351 QTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSXEKRALDRLHKDIYQEI 530
           QT PPT+ ++++F +  +P G++ D+  AE    RT     T  EKRALDR + D Y ++
Sbjct: 65  QTNPPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALDRQNFDQYNDL 117

Query: 531 RHAAEAHRQTRKHIRNWIKPGMTMIDI 611
           R AAE HRQ R++ ++ IKPGM+M+D+
Sbjct: 118 RRAAEVHRQARQYAQSVIKPGMSMMDV 144


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 596 HARLDPIADVFSCLPVGFSSMS 531
           H  LD I DVFSC PV   + S
Sbjct: 194 HILLDFILDVFSCSPVNLKAQS 215


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 358 SHLLYQ*RNYFLMETFLRVKLWTMVLL--RVLMRELQKIVLQVXRKELLIDYIKIFIRKS 531
           SHL     +YFL++ F+RV     ++L  +   ++    VL    K L + Y++   +  
Sbjct: 286 SHLHDNLNSYFLLKFFVRVLFGVCMILIWKSFAKQALLAVLPPIFKSLRLSYLEPKSQSE 345

Query: 532 DMLLKPTGRQENTSAIGSSL 591
             +   TG   +   IG+ L
Sbjct: 346 KGIRAATGSNHSPGNIGTEL 365


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 576 CGCVFLSACGLQQHV*FPDKYLYVIYQELFSXHL*NDFLQFSHQYPQ 436
           C CV + +   QQ +  P  ++Y +     +  +  +FL F H YPQ
Sbjct: 351 CYCVEVHS---QQTILVPSGWIYAVVTPCDTISIAGNFLTFLHIYPQ 394


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 474 TSXEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNW 581
           T+      D L +D   E+    + + QT+K  RNW
Sbjct: 377 TNFNNEVYDTLREDSIPEVVIVKKTYPQTKKKNRNW 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,995
Number of Sequences: 5004
Number of extensions: 24806
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)