Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_F13
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 92 4e-19
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 89 3e-18
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 31 0.98
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 29 3.0
03_01_0040 - 353861-353981,354618-354730,355034-355129,355406-35... 28 5.2
12_02_0604 + 20920609-20922144 28 6.9
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 27 9.2
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 91.9 bits (218), Expect = 4e-19
Identities = 46/87 (52%), Positives = 59/87 (67%)
Frame = +3
Query: 351 QTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSXEKRALDRLHKDIYQEI 530
QT PP+IP+ ELFP G+FPEG+I + D+ R TS EKR L+RL K +Y +
Sbjct: 191 QTDPPSIPIDELFPSGDFPEGEIQQYK-----DDNLW--RTTSEEKRELERLQKPMYNAV 243
Query: 531 RHAAEAHRQTRKHIRNWIKPGMTMIDI 611
R AAE HRQ RKH+R+ +KPGM MID+
Sbjct: 244 RRAAEVHRQVRKHMRSILKPGMLMIDL 270
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 89.0 bits (211), Expect = 3e-18
Identities = 46/87 (52%), Positives = 58/87 (66%)
Frame = +3
Query: 351 QTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSXEKRALDRLHKDIYQEI 530
QT PP+IPV ELFP G FPEG+I + D+ R TS EKR L+RL K +Y +
Sbjct: 135 QTDPPSIPVDELFPSGEFPEGEIQHYK-----DDNLW--RTTSEEKRELERLQKPMYNAV 187
Query: 531 RHAAEAHRQTRKHIRNWIKPGMTMIDI 611
R AAE HRQ RK++R+ +KPGM MID+
Sbjct: 188 RRAAEVHRQVRKYMRSILKPGMLMIDL 214
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 409 RVKLWTMVLLRVLMRELQKIV-LQVXRKELLIDYIKIFIRKSDMLLK 546
+V+ + + LL +M+ + V L+V + +L + +KI +K+DML++
Sbjct: 69 KVQFYALTLLETMMKNCGEYVQLEVAEQHVLQEMVKIIQKKNDMLVR 115
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 409 RVKLWTMVLLRVLMREL-QKIVLQVXRKELLIDYIKIFIRKSDMLLK 546
+V+ + + LL LM+ + QV +++L + IKI +K+DM L+
Sbjct: 55 KVQFFALTLLETLMKNCGDHVHSQVVERDILQEMIKIVKKKTDMQLR 101
>03_01_0040 -
353861-353981,354618-354730,355034-355129,355406-355522,
356071-356169,356416-356547,356651-356827,356949-357123,
357225-357313,357981-358079
Length = 405
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 375 VAELFPDGNFPEGQIMDHGPAE 440
+A+ PDGNF +G+++ GP E
Sbjct: 88 IAKCGPDGNFSKGEMVPFGPIE 109
>12_02_0604 + 20920609-20922144
Length = 511
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 447 DERTAKNRFTSXEKRA-LDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMT 599
D K + EKR +D L KDI Q AEAHR+ + I W+ T
Sbjct: 445 DGEIGKLKVALMEKREKIDVLIKDIEQLNLEVAEAHRKRKGGIWAWLYAATT 496
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 450 ERTAKNRFTSXEKRALDRLHKDIYQE 527
+RT K R+ S EK+ LDR HK++ ++
Sbjct: 60 KRTGKRRYPS-EKKRLDRRHKELLRK 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,597,905
Number of Sequences: 37544
Number of extensions: 153840
Number of successful extensions: 393
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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