Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_F04
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...   105   4e-24
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.7  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   9.2  

>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score =  105 bits (253), Expect = 4e-24
 Identities = 61/134 (45%), Positives = 86/134 (64%), Gaps = 17/134 (12%)
 Frame = +2

Query: 95  VRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFL 274
           +++++ RQ + Q+L+  +++SSA M +K L  VT  ESP+VVVLS SMEP+F RGDLLFL
Sbjct: 1   MQKLSFRQGLAQILNLLLVLSSAYMGYKTLSFVTDCESPVVVVLSESMEPSFQRGDLLFL 60

Query: 275 TN----YPE-------------EPVRVGEIVVFKVEGRDIPIVHRVLKLHEKNNGTVKFL 403
            N    + E              PV +G+IVV+ +  R IPIVHRV+KL+E  N T   +
Sbjct: 61  DNRNPSFDEAKVPSVFEKIIYGSPVGIGDIVVYSLPDRPIPIVHRVVKLYESENQT-HLI 119

Query: 404 TKGDNNSVDDRGLY 445
           TKGDNN +DD  ++
Sbjct: 120 TKGDNNKIDDVAMF 133



 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +3

Query: 438 ACMPRGQLWLTKKD-VVGRARGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHR 602
           A  P+   +L +++ ++G  RG+ PY+GM+TI++ +YP  K+ +L  L +  L+ +
Sbjct: 131 AMFPKSINYLDRENHILGVVRGYFPYLGMITIWLTDYPILKYIMLGGLGLLTLIQK 186


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 442 VCPGANCGSLKKMWLAVQE 498
           +C     GSLKK+W+ VQE
Sbjct: 478 LCQNYTIGSLKKVWIVVQE 496


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 405 PKVTIIALMTEACMPRGQLWLTKKDVVGRARGF 503
           P +  + ++T +C+  G +WLTK    G ++ F
Sbjct: 575 PMLLPLCVLTSSCLQNGDVWLTKDIRTGLSQIF 607


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 260 DLLFLTNYPEEPVRVGEIVVFKVEGRDIPIVHRV 361
           DLL   N PE P+ + ++ V K+E  DI +V  V
Sbjct: 61  DLLAKINDPEHPLTLAQLSVVKLE--DIEVVDNV 92


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 546 PKFKFAVLACLAIYVLVHRGVTEALXSEV 632
           P   FA+L    +YV+VHR   + L S +
Sbjct: 499 PPPTFAILTNTGVYVVVHRRPIDVLASAI 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,504
Number of Sequences: 5004
Number of extensions: 57556
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)