Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_F04
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)              231   5e-61
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     32   0.34 
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_17778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)                 28   5.6  
SB_34803| Best HMM Match : Pox_A32 (HMM E-Value=3.7)                   28   7.4  
SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)                     28   7.4  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_14900| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)                     27   9.7  

>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
          Length = 523

 Score =  231 bits (564), Expect = 5e-61
 Identities = 108/124 (87%), Positives = 116/124 (93%)
 Frame = +2

Query: 83  LFDDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGD 262
           +FDDVRRMNKRQ  YQVL+F +IVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAF RGD
Sbjct: 6   MFDDVRRMNKRQLFYQVLNFAIIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFQRGD 65

Query: 263 LLFLTNYPEEPVRVGEIVVFKVEGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSVDDRGL 442
           LLFLTNY E+P+RVGEIVVFKVEGR+IPIVHRVLK+HEK NG +KFLTKGDNNSVDDRGL
Sbjct: 66  LLFLTNYKEDPIRVGEIVVFKVEGREIPIVHRVLKVHEKENGDIKFLTKGDNNSVDDRGL 125

Query: 443 YAQG 454
           YA G
Sbjct: 126 YAPG 129



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 31/35 (88%), Positives = 33/35 (94%)
 Frame = +3

Query: 453 GQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFK 557
           GQLWL KKDVVGRARGF+PYVGMVTI MN+YPKFK
Sbjct: 129 GQLWLAKKDVVGRARGFVPYVGMVTILMNDYPKFK 163


>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 376

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 482 HIFFSEPQLAPGHTSLCHQRY 420
           H+ FS+P +A GH+ +CH +Y
Sbjct: 142 HLGFSDPSMASGHSFMCHAQY 162


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +2

Query: 101 RMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTN 280
           R+ K   + +++  G+ ++  ++I  G+ +     S  VV+L G    A   G +LF+  
Sbjct: 144 RIKKYDMLEKLVIAGLALTVLVIISFGITMQNCFLSIFVVLLYGYYPQAIQTGTVLFINT 203

Query: 281 YPEEPVRVGEIVVFKVEGRDIPI 349
              +     +  V +V GRD+ +
Sbjct: 204 LKTKKFGSPKESVIEVHGRDLTV 226


>SB_17778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = -3

Query: 634 NTSDXSASVTPLCTNT*IARQASTANLNLGYSFIYM-VTIPTYGKNPLARPTTSFLVSHS 458
           NT + +AS+ P  T   I++ ++ +       + Y+ V +  +   P+  P T ++ +  
Sbjct: 27  NTFEITASMAPT-TGVRISKLSAKSRTVTKNRYSYIAVYLEAHSSVPVGTPVTLYITAKG 85

Query: 457 WPLGIQASVINAIIV 413
              G+Q S+++ +IV
Sbjct: 86  RSRGVQTSLVSNLIV 100


>SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
          Length = 666

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = -3

Query: 634 NTSDXSASVTPLCTNT*IARQASTANLNLGYSFIYM-VTIPTYGKNPLARPTTSFLVSHS 458
           NT + +AS+ P  T   I++ ++ +       + Y+ V +  +   P+  P T ++ +  
Sbjct: 592 NTFEITASMAPT-TGVRISKLSAKSRTVTKNRYSYIAVYLEAHSSVPVGTPVTLYITAKG 650

Query: 457 WPLGIQASVINAIIV 413
              G+Q S+++ +IV
Sbjct: 651 RSRGVQTSLVSDLIV 665


>SB_34803| Best HMM Match : Pox_A32 (HMM E-Value=3.7)
          Length = 354

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 631 TSDXSASVTPLCT-NT*IARQASTANLNLGYSFIYMVTIPTYGKNPLARPTTSFLVSHSW 455
           T+  +A + P+CT NT   +Q       +  S I ++ I        A P T+    HS 
Sbjct: 248 TTIVTAIMDPVCTTNTLAVQQTLRVRAIIVISIIIIIIIIIIITTSAAIPATTNTTQHSS 307

Query: 454 PLGIQASVIN 425
           P+ +  S+I+
Sbjct: 308 PITLPLSIID 317


>SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)
          Length = 687

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
 Frame = -1

Query: 375 SCSFNTL*TIGISRPSTLKTTISPTRTGSSG*LVKN---SKSPL*KAGSILPDSTTTIGL 205
           S S+NT  T      ST  T ISP+   +   LV +   S+S L  + +++P  +T+I L
Sbjct: 448 SVSYNTTLTPAPDETSTAATAISPSSVANMTTLVSSVNLSRSSL--STTLIPSISTSI-L 504

Query: 204 SLPVTTIKPFHIIK-AEDTI-IPKLNTWYMNCRLFIRRTSSNRLSNIV 67
           S   T I  F+  +    TI +  +N   ++    I  T+  R+++ +
Sbjct: 505 SYNTTVIATFNTTRLVTSTISLSTVNVSALSTTSSIESTTMARVASFI 552


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 223 YYYYWAFTSCYYHQTFPYHQGRRHYH 146
           YYYY+ +   YY+  + Y+    HY+
Sbjct: 109 YYYYYYYYYYYYYYYYYYYYYYHHYY 134


>SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -1

Query: 303 TRTGSSG*LVKNSKSPL*KAGSILPDSTTTIGLSLPVTTIKPFHIIKAEDTIIPKL 136
           +R  S+G ++++    L + G  LP +   +GLS      KPF I KA    IPKL
Sbjct: 202 SRKSSTGLIIQSQNEILKRLGD-LPHNDQPVGLSTFANFAKPF-IHKAPIPNIPKL 255


>SB_14900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 479 IFFSEPQLAPGHTSLCHQRYY 417
           +  SEP +  G  S+CHQR++
Sbjct: 169 VILSEPNVIRGKWSICHQRFH 189


>SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)
          Length = 473

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -1

Query: 375 SCSFNTL*TIGISRPSTLKTTISPTRTGSSG*LVKNSKSPL*KAGSILPDSTTTIGLSLP 196
           S S+NT  T      ST  T ISP+  G+   LV +    +    + L  S +T  LS  
Sbjct: 70  SVSYNTTLTPAPDVASTAPTAISPSSVGNMTTLVSSVNLTISSLSTTLIPSISTFILSYN 129

Query: 195 VTTI 184
            T I
Sbjct: 130 TTVI 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,266,866
Number of Sequences: 59808
Number of extensions: 440911
Number of successful extensions: 1320
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)