Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_F03
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical pr...    75   1e-14
AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    57   5e-09
AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical ...    44   3e-05
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    29   1.5  
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical pr...    27   4.7  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   4.7  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   4.7  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical
           protein B0513.3 protein.
          Length = 62

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 33/50 (66%), Positives = 39/50 (78%)
 Frame = +3

Query: 57  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 206
           MAKSKNHTNHNQN+KAHRNGI KP+K    S  G+D KF++N RF +K N
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGITKPKKHIFLSMKGVDAKFIKNLRFSRKNN 50


>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 56.8 bits (131), Expect = 5e-09
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = +3

Query: 63  KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 206
           K +NHTNHN+N KAHRNGI KP+K    S  G   +F+++ RF +K N
Sbjct: 14  KPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRFFRKNN 61


>AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical
           protein Y37H9A.5 protein.
          Length = 167

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +3

Query: 63  KSKNHTNHNQNRKAHRNGIKKPR 131
           KSKNHTNHNQN  AHR GI KP+
Sbjct: 80  KSKNHTNHNQNNTAHRIGITKPK 102


>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5b protein.
          Length = 1136

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +1

Query: 4   LLASVLSSDSKWIEN--SSKWQSQRIIQIITKTAKLTE 111
           L+ ++LS   KW+ +  S KWQ  RI   IT+ AK+T+
Sbjct: 269 LVLAILSKCGKWMTDSLSEKWQQHRI--QITEKAKMTK 304


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5a protein.
          Length = 1088

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +1

Query: 4   LLASVLSSDSKWIEN--SSKWQSQRIIQIITKTAKLTE 111
           L+ ++LS   KW+ +  S KWQ  RI   IT+ AK+T+
Sbjct: 269 LVLAILSKCGKWMTDSLSEKWQQHRI--QITEKAKMTK 304


>Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical
           protein ZC504.3 protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 96  RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCK 197
           +K HR+ +KK R+ RH   +   P +    R C+
Sbjct: 266 QKLHRDAMKKRREQRHREAVSKLPVYYPGLRGCQ 299


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 117  YHFCELCGFGYDLYDSL 67
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 117  YHFCELCGFGYDLYDSL 67
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
            protein Y110A7A.16 protein.
          Length = 1250

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 7    LASVLSSDSKWIENSSKWQSQRIIQIIT 90
            L +VLS + +W+EN     SQ I+ +IT
Sbjct: 1144 LLNVLSENYRWLENIGNELSQLILVLIT 1171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,870,257
Number of Sequences: 27780
Number of extensions: 124736
Number of successful extensions: 436
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)