Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_E17
         (376 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit bet...    33   1.3  
UniRef50_Q8I3R5 Cluster: Putative uncharacterized protein PFE098...    32   3.0  

>UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit beta;
           n=5; Plasmodium|Rep: DNA-directed RNA polymerase subunit
           beta - Plasmodium falciparum
          Length = 1024

 Score = 33.5 bits (73), Expect = 1.3
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = -2

Query: 219 LNLSRLFSNIKYSFTSTIIYFNKS*IKILK*VSHHT*QYVV-ELFILHTYIQ*KKYIYQS 43
           LN+   F+N K++F   ++Y N   I I K +S      ++ +  +++ YI   K+IY  
Sbjct: 160 LNIDCYFNNFKFNFLILLLYLNN--IYINKNISLFIYNNIINKKILIYNYI---KFIYSK 214

Query: 42  KNNIKNKLQQK 10
            NNI N +  K
Sbjct: 215 YNNINNIISLK 225


>UniRef50_Q8I3R5 Cluster: Putative uncharacterized protein PFE0980c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFE0980c - Plasmodium falciparum
           (isolate 3D7)
          Length = 2488

 Score = 32.3 bits (70), Expect = 3.0
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -2

Query: 168 IIYFNKS*IKILK*VSHHT*QYVVELFILHTYIQ*KKYIYQSKNNIKN 25
           I Y+NK+  K +  +++   Q+V + ++ H Y+    YIY + NNI N
Sbjct: 595 INYYNKNITKNI--INNDIKQFVNKNYMEHNYVHNNTYIYNNNNNINN 640


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,836,487
Number of Sequences: 1657284
Number of extensions: 2067015
Number of successful extensions: 4260
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4259
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14019197511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)