Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_E15
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    29   0.43 
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    28   1.0  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    28   1.3  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   4.0  
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   5.3  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   5.3  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   7.1  

>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 360 ERGVSPLPEPGTHRVVITSEEQFKIFTLPSLKPHN 464
           E   +P+P PG H  +      F +    S KPHN
Sbjct: 49  EASRNPIPRPGLHNFLKYIFANFSVMVFSSSKPHN 83


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +3

Query: 102 GSMVRCLYFARTFLINTQQSTPTLWAGTNNGTVYAFTLHVPNTNKRKEEPVTCQLAKEIQ 281
           G M   L +A   L       P +     NG +  +TL  P TN++     TC   + IQ
Sbjct: 349 GYMGYVLSYAAKMLFGIDDVGPYVSMNNKNGDLTEYTLRHPETNEQLISMATCYGFRNIQ 408


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 388 GSGSGDTPRSTSRGSGRGTEAPSSTVIPMTGA 293
           G  S D+PR +  G  RG+  P  T+ P  GA
Sbjct: 889 GGVSRDSPRYSRGGYSRGSVPPRETLAPSKGA 920


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = +3

Query: 15   PIDKAASETD----AEIKPIERAVEARST 89
            P D  ASETD     E K +E+ VEARS+
Sbjct: 1352 PSDAVASETDNKNLVENKAVEKRVEARSS 1380


>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +3

Query: 342 PDPLEVERGVSPLPEPGTHRVVITSEEQFKIFTLPSLKPHNKYKLTAHEGARVRRT 509
           P P EVE  +S  P     +VV+  EE    F  P      K      +G +  +T
Sbjct: 31  PQPPEVEEVLSEEPYQKNEKVVVLDEEDADAFLHPEEAEAKKESEKPSDGEKKGKT 86


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 367 PRSTSRGSGRGTEAPSSTVIPMTGAL 290
           P+    G+GRG  AP++  +P  G +
Sbjct: 655 PQFPPSGNGRGASAPATYFVPQMGGM 680


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 232 LVLGTCSVKAYTVPLFVPAHSVGVDCWV 149
           L+   C +   + P  V  HS G+DC+V
Sbjct: 167 LIYDMCILNDSSTPTLVVLHSDGLDCYV 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,229
Number of Sequences: 5004
Number of extensions: 44148
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)