Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_E15
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z46787-1|CAA86739.2|  360|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z50797-8|CAL36515.1|  291|Caenorhabditis elegans Hypothetical pr...    28   6.5  
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co...    28   6.5  

>U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical protein
            F56F10.4 protein.
          Length = 958

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 4/168 (2%)
 Frame = +3

Query: 12   KPIDKAASETDAEIKPIERAVEARSTDDAYGS----MVRCLYFARTFLINTQQSTPTLWA 179
            K ID    E     +PIE A E     D Y       V CL   R  +++ +     +  
Sbjct: 718  KRIDDFEEEEVFMERPIE-AREELGVLDCYAENSKGTVTCLRMMRFPVLDDKNVDDIIAV 776

Query: 180  GTNNGTVYAFTLHVPNTNKRKEEPVTCQLAKEIQLKHRAPVIGITVLDGASVPLPDPLEV 359
            G + G+VY + +   +   R       +  K++ + H+ PV+ + + +            
Sbjct: 777  GLHEGSVYFYAISEHDVGLRMT--FKAEQIKKLSIPHKQPVVNLDITN------------ 822

Query: 360  ERGVSPLPEPGTHRVVITSEEQFKIFTLPSLKPHNKYKLTAHEGARVR 503
            E G        + R+V+ +EEQ +I+    +   + YK+TA EG +++
Sbjct: 823  EEGYFS----ASTRIVVITEEQLRIYNCQPMVKRDSYKITALEGLKIK 866


>Z46787-1|CAA86739.2|  360|Caenorhabditis elegans Hypothetical
           protein C16C10.1 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +2

Query: 395 TSCSHHVGGTVQDIHSAFVETAQQVQADRARGRSGSAHGVVAVLVRRAPGVVLAV 559
           T+C   +GG++ D++ +     + +    +RG S  + G+V  LV+ +P   + +
Sbjct: 294 TNCQIRIGGSIDDMNKSITTVIKDMY--HSRGISAFSSGLVPRLVKVSPSCAIMI 346


>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
            T22H6.6a protein.
          Length = 1405

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 249  PVTCQLAKEIQLKHRAPVIGITVLDGASVPLPDPLEVERGVSPLPEPGTHRVVITSEEQF 428
            P T   A ++     A ++        SV   D +++E G +PLP P   R  I    QF
Sbjct: 1106 PATTMAAMKMSFPETASMLPQLQEKLESVSFLDQIKIEPGETPLPSPNVVRPTIIPTAQF 1165


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
            protein T22H6.6a protein.
          Length = 1405

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 249  PVTCQLAKEIQLKHRAPVIGITVLDGASVPLPDPLEVERGVSPLPEPGTHRVVITSEEQF 428
            P T   A ++     A ++        SV   D +++E G +PLP P   R  I    QF
Sbjct: 1106 PATTMAAMKMSFPETASMLPQLQEKLESVSFLDQIKIEPGETPLPSPNVVRPTIIPTAQF 1165


>Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical
           protein T22H6.6b protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 249 PVTCQLAKEIQLKHRAPVIGITVLDGASVPLPDPLEVERGVSPLPEPGTHRVVITSEEQF 428
           P T   A ++     A ++        SV   D +++E G +PLP P   R  I    QF
Sbjct: 341 PATTMAAMKMSFPETASMLPQLQEKLESVSFLDQIKIEPGETPLPSPNVVRPTIIPTAQF 400


>Z50797-8|CAL36515.1|  291|Caenorhabditis elegans Hypothetical
           protein T22H6.6c protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 330 SVPLPDPLEVERGVSPLPEPGTHRVVITSEEQF 428
           SV   D +++E G +PLP P   R  I    QF
Sbjct: 19  SVSFLDQIKIEPGETPLPSPNVVRPTIIPTAQF 51


>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
           complex protein protein15 protein.
          Length = 1127

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 247 SSFRLLVLGTCSVKAYT-VPLFVPAHSVGVDCWVLMRKVLAK 125
           S+ RLL  G      YT   + VP+ SVG D W ++ ++L++
Sbjct: 427 STIRLLPRGFADSSIYTHEQVVVPSLSVGTDDWPILSELLSE 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,694,479
Number of Sequences: 27780
Number of extensions: 281133
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)