Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_E15
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   7.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 134 DLPHQYPAIDADAMGRHEQRH 196
           DL   YP+++ D +G   +RH
Sbjct: 191 DLREYYPSVEWDILGVPAERH 211


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = -1

Query: 505 RRTRAPSCAVSLYLLCGFNEGRVNILNCSSDVMTTRCVPG 386
           + T+  +  + ++L+C       NI++     +T  C PG
Sbjct: 616 KATKTLAIVLGVFLICWLPFFTCNIMDAICTKLTADCQPG 655


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 370 TPRSTSRGSGRGTEAPSST-VIPMTGAL 290
           +P+S S  S R  E+P S  V PM  ++
Sbjct: 444 SPQSDSSSSSRSAESPMSVQVDPMAASV 471


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 556 SKHHSRCAPHENCDHAVRRTRAPSCAVS 473
           SK  + C PH N D  +   +  S A++
Sbjct: 101 SKTSNPCLPHRNSDRDLNIRKWSSIAIN 128


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 8    EEAN*QSRLGNGRGNQTD 61
            ++ N ++R+GNG  NQ+D
Sbjct: 1020 KQLNNKARIGNGPINQSD 1037


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,835
Number of Sequences: 438
Number of extensions: 3252
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)