Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_E12
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 179 4e-46
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 63 4e-11
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 38 0.001
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 36 0.004
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 31 0.19
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 3.1
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 4.1
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 26 4.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.4
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 25 7.2
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 25 7.2
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.2
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac... 25 9.5
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 25 9.5
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 179 bits (435), Expect = 4e-46
Identities = 86/157 (54%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Frame = +1
Query: 154 MGILGLSKLIADIAPHAVKEMEIKNYFGRKIAIDASMSLYQFLIAVRSE-GAQLVSVDGE 330
MGI GL++++++ AP +VK +IKNYFGRK+AIDASMSLYQFLI VRS+ G QL++ GE
Sbjct: 1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGE 60
Query: 331 TTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDMKAHQLNXXXXXXXXXXXXLQKATEAGD 510
TTSHLMG FYRT+R+V+NGIKP +VFDGKPP +K+ +L ++ E G
Sbjct: 61 TTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGT 120
Query: 511 TASVDKFNRRLVKVTKQHSEEAKQLLKLMGVRLLMHP 621
VD+F +R VKVT+QH++EAK+LL+LMG+ + P
Sbjct: 121 AEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAP 157
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 588 QIDGCPVVDAPCEAEAQCAAL 650
++ G P V+APCEAEAQCAAL
Sbjct: 147 ELMGIPFVNAPCEAEAQCAAL 167
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 62.9 bits (146), Expect = 4e-11
Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Frame = +1
Query: 154 MGILGLSKLIADIAPHAVKEMEIKNYFGRKIAIDASMSLYQFLIAVRS-EGAQLVSVDGE 330
MG+ GL DI + ++++ +++AIDAS+ +YQFL AVR EG QL S
Sbjct: 1 MGVSGLW----DILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKS---- 52
Query: 331 TTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDMK 432
SH++G F R +L+ GIKPV+VFDG P +K
Sbjct: 53 --SHVVGFFRRICKLLFFGIKPVFVFDGGAPSLK 84
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 597 GCPVVDAPCEAEAQCAAL 650
G P + AP EAEAQC+ L
Sbjct: 768 GLPYIVAPQEAEAQCSKL 785
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/94 (26%), Positives = 46/94 (48%)
Frame = +1
Query: 154 MGILGLSKLIADIAPHAVKEMEIKNYFGRKIAIDASMSLYQFLIAVRSEGAQLVSVDGET 333
MGI GL L+ + K ++ + G+ + +D + L++ + E ++ + ET
Sbjct: 1 MGIKGLLGLLKPMQ----KSSHVEEFSGKTLGVDGYVWLHKAVFTCAHE----LAFNKET 52
Query: 334 TSHLMGTFYRTIRLVENGIKPVYVFDGKPPDMKA 435
+L ++ + L G+KP+ VFDG P KA
Sbjct: 53 DKYLKYAIHQALMLQYYGVKPLIVFDGGPLPCKA 86
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 36.3 bits (80), Expect = 0.004
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Frame = +1
Query: 154 MGILGLSKLIADIAPHAVKEMEIKNYFGRKIAIDASMSLYQFLIAVRSEGAQLVSVDGET 333
M I L+ I D H K + ++ K+ IDAS L Q + + + Q ++V+GE+
Sbjct: 1 MTIRSLNLFIID-KKHQHKS-SLSSFQNCKLGIDASFYLTQIIHSFTPQELQSLAVNGES 58
Query: 334 --TSHLMGTFYRTIRLVENGIKPVYVFDGKPPDMKA 435
H + F +R EN I P++VF+G P +A
Sbjct: 59 EYLQHRISEFLEQLR-TEN-ITPIFVFNGIPLTFEA 92
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 484 LQKATEAGDTASVDKFNRRLVKVTKQHSEEAKQLLKLMGVRLLMHPV 624
LQKA + T +DK RRL + + Q+ E ++LK++G+ P+
Sbjct: 252 LQKAIKLKQT-ELDKLERRLYRPSPQNIFEIFEILKILGIPASFSPI 297
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.6 bits (56), Expect = 3.1
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Frame = +1
Query: 151 KMGILGLSKLIADIAPHAVKEME-IKNYFGRKIAIDASMSLYQFLIAVRSEGAQLVSVDG 327
K G L + + +I A+ EME IK++F ++ A+ Y FL + A +VS +G
Sbjct: 382 KDGTLRIIRNSINIENVALIEMEGIKDFFS--VSFRANYDNYIFLSLICETRAIIVSPEG 439
Query: 328 ----------ETTSHLMGTFYRTIRLVENGIKPVYVFDGK 417
E ++ + T Y ++++ K + +FDGK
Sbjct: 440 VFSANHDLSCEESTIFVSTIYGNSQILQITTKEIRLFDGK 479
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 298 EGAQLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVF 408
EGA + SV+ T TF R I+L+ YVF
Sbjct: 355 EGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVF 391
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +1
Query: 352 TFYRTIRLVENGIKPVYVFDGKP---PDMK 432
TF T+ + N KP Y+F+ KP PD++
Sbjct: 247 TFCSTLSSLTNSEKPTYIFNFKPNSTPDLR 276
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 310 LVSVDGETTSHLMGTFYRTIRLVENGIKPVYV 405
+ + DG + + TFY L + +KP+Y+
Sbjct: 3926 ITASDGSAVTTSLSTFYSASSLASSVVKPLYI 3957
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/69 (20%), Positives = 29/69 (42%)
Frame = +1
Query: 181 IADIAPHAVKEMEIKNYFGRKIAIDASMSLYQFLIAVRSEGAQLVSVDGETTSHLMGTFY 360
+ ++APH + + Y+G + + L+ ++A ++ L+ V+ GT
Sbjct: 288 VFELAPHPMYSVGYAGYYGMSLLTGSYAVLFASILAHAAQFGFLLFVENPHIERTYGTDI 347
Query: 361 RTIRLVENG 387
RL G
Sbjct: 348 NHARLSPRG 356
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 280 LIAVRSEGAQLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVF 408
++ V S LVS DG+ + G Y ++L EN +K Y F
Sbjct: 53 IVGVESGAQPLVSDDGKLVLTVNGEIYNHLKLREN-LKGNYKF 94
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 295 SEGAQLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDMKAH 438
SEG S TTS T R +EN K + D K D + H
Sbjct: 158 SEGEPESSTSATTTSVARRTRQRLAEHLENSKKTILQHDNKEEDKEIH 205
>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 166 GLSKLIADIAPHAVKEMEIKNYFGRKIAIDAS 261
G + I D+ PH V+ +++ G+K++ + S
Sbjct: 12 GQNTNIRDVFPHVVRSNSSQSHIGKKVSSEQS 43
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 521 WTSSTDVWLK*QNNTVKRLNNSSN 592
W + +WL N+V+ LNN SN
Sbjct: 124 WDGTIKLWLGNLPNSVQTLNNGSN 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,143
Number of Sequences: 5004
Number of extensions: 41903
Number of successful extensions: 125
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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