Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_E12
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338...   155   4e-38
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244...    55   4e-08
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547...    53   2e-07
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908...    38   0.005
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881...    35   0.065
06_01_1092 + 8966584-8967053,8967737-8967854,8968030-8968253,896...    30   1.4  
02_02_0283 + 8542344-8542604                                           30   1.8  

>03_06_0576 +
           34832900-34832911,34833006-34833122,34833752-34833810,
           34833901-34833960,34834197-34834250,34834332-34834380,
           34834493-34834540,34834889-34834954,34835591-34835641,
           34835732-34835851,34835921-34836005,34836428-34836509,
           34836666-34836774,34837005-34837051,34837131-34837188,
           34839114-34839220,34839700-34839765,34839833-34839879,
           34839977-34840042,34840146-34840243,34840344-34840469,
           34840551-34840835,34840920-34840985,34841079-34841228
          Length = 675

 Score =  155 bits (375), Expect = 4e-38
 Identities = 75/157 (47%), Positives = 107/157 (68%), Gaps = 1/157 (0%)
 Frame = +1

Query: 154 MGILGLSKLIADIAPHAVKEMEIKNYFGRKIAIDASMSLYQFLIAVRSEGAQLVSVD-GE 330
           MGI GL+KL+A+ AP A     +++Y GR +AID S+S+YQFLI V  +G ++++ + GE
Sbjct: 1   MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60

Query: 331 TTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDMKAHQLNXXXXXXXXXXXXLQKATEAGD 510
            TSHL G   RT+R++E GIKPV+VFDG+PPDMK  +L             L +A E GD
Sbjct: 61  VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGD 120

Query: 511 TASVDKFNRRLVKVTKQHSEEAKQLLKLMGVRLLMHP 621
              ++KF++R VKVTK+H+E+ K+LL LMGV ++  P
Sbjct: 121 EDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAP 157



 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = +3

Query: 597 GCPVVDAPCEAEAQCAAL 650
           G PVV AP EAEAQCAAL
Sbjct: 150 GVPVVQAPGEAEAQCAAL 167


>05_06_0238 -
           26621843-26622457,26622625-26623375,26624372-26624418,
           26624632-26624740,26624969-26625050,26625164-26625248,
           26625320-26625439,26625735-26625800,26625994-26626041,
           26626148-26626196,26626576-26626613
          Length = 669

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 24/40 (60%), Positives = 33/40 (82%)
 Frame = +1

Query: 484 LQKATEAGDTASVDKFNRRLVKVTKQHSEEAKQLLKLMGV 603
           L +A E GD  +++KF++R VKVTKQH+EE K+LL+LMGV
Sbjct: 24  LTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGV 63


>03_02_0078 +
           5476288-5476626,5477474-5477670,5477750-5477885,
           5478055-5478132,5478227-5478280,5478466-5478650,
           5478781-5480374,5480506-5480700,5480753-5480904,
           5481213-5481486,5481597-5481733,5482219-5482258,
           5482773-5483261,5483605-5484168
          Length = 1477

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 29/97 (29%), Positives = 55/97 (56%)
 Frame = +1

Query: 154 MGILGLSKLIADIAPHAVKEMEIKNYFGRKIAIDASMSLYQFLIAVRSEGAQLVSVDGET 333
           MG+ GL +L+A +     + + ++   G+++A+DAS+ + QF+ A+R +   ++      
Sbjct: 1   MGVHGLWELLAPVG----RRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIR----- 51

Query: 334 TSHLMGTFYRTIRLVENGIKPVYVFDGKPPDMKAHQL 444
            +HL+G   R  +L+    +PV+VFDG  P +K   L
Sbjct: 52  DAHLLGFLRRICKLLFLRARPVFVFDGATPALKRRTL 88



 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 588 QIDGCPVVDAPCEAEAQCA 644
           Q+ G P + AP EAEAQCA
Sbjct: 865 QMFGLPYIIAPMEAEAQCA 883


>09_05_0016 +
           20089545-20089748,20090072-20090263,20090644-20090814,
           20090915-20091096,20091189-20091435,20091776-20091908,
           20092070-20092599,20092940-20093170
          Length = 629

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
 Frame = +1

Query: 235 GRKIAIDASMSLYQFLIAVRSEGAQLVSVDGETTSHLMGTFYRTIRLVEN-GIKPVYVFD 411
           GR++A+D S  +     A+R+              HL   F+RT+ L    G  PV+V D
Sbjct: 25  GRRVAVDLSFWVVSHSAAIRARSPHA------RLPHLRTLFFRTLSLFSKMGAFPVFVVD 78

Query: 412 GKPPDMKAHQLNXXXXXXXXXXXXLQKATEAGDTASVDKF-NRRLVKVTKQHSEEAKQLL 588
           G+P  +K+                   +TEA   AS D     R  K T+ + E+  +LL
Sbjct: 79  GQPSPLKSQVRAARFFRGSGMDLAALPSTEA--EASADALVQPRNAKFTR-YVEDCVELL 135

Query: 589 KLMGVRLL 612
           + +G+ +L
Sbjct: 136 EYLGMPVL 143


>01_06_0906 +
           32886693-32886919,32887589-32887708,32887978-32888101,
           32888224-32888361,32888492-32888701,32889085-32889232,
           32890452-32890801,32890909-32890963,32891087-32891382,
           32891480-32891531,32891740-32891947,32892064-32892446,
           32894102-32894538,32895452-32895643
          Length = 979

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 23/94 (24%), Positives = 42/94 (44%)
 Frame = +1

Query: 340 HLMGTFYRTIRLVENGIKPVYVFDGKPPDMKAHQLNXXXXXXXXXXXXLQKATEAGDTAS 519
           H+    +R   L  +G+KP+ VFDG    MK  Q               ++   AG++ +
Sbjct: 77  HIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGNSRA 136

Query: 520 VDKFNRRLVKVTKQHSEEAKQLLKLMGVRLLMHP 621
             +  ++ V +T + + E  Q+LK   V  ++ P
Sbjct: 137 AFECYQKAVDITPRIAFELIQVLKQEKVDYIVAP 170


>06_01_1092 +
           8966584-8967053,8967737-8967854,8968030-8968253,
           8968352-8968588,8969122-8969275,8969356-8969438,
           8969573-8969687,8969837-8969909,8970005-8970147
          Length = 538

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +1

Query: 157 GILGLSKLIADIAPHAVKEMEIKNYFGRKIAIDASMSLYQFL 282
           GILGLS     +      +  I N FG  IA D S   Y FL
Sbjct: 289 GILGLSNAAISLPTQLASQGIISNVFGHCIAADPSNGGYMFL 330


>02_02_0283 + 8542344-8542604
          Length = 86

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -2

Query: 620 GCINNRTPINLRSCLASSLCCFVTLTKRLLNLSTEAVSPASV 495
           GC  NRTP  L     +SL   ++LT     L T A SPA+V
Sbjct: 10  GCCRNRTPFRLH---CASLPLSLSLTAPAAELLTVATSPAAV 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,789
Number of Sequences: 37544
Number of extensions: 246348
Number of successful extensions: 542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)