Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_E11
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    27   1.8  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   7.2  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 401 PLPRRMCQLLSLSATPRLLQPLIISNAECHLSRNNL 508
           P  RR+C    L+A+PRL++P+ +   E H   ++L
Sbjct: 823 PTARRVCYSSFLTASPRLMEPVYM--VEVHAPADSL 856


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +1

Query: 484 VPLVTEQPKVIVETTKQAVLSKISPHVNKVYGARAVAE 597
           VP++T Q  ++++      + K+ P +N +   + +AE
Sbjct: 194 VPILTAQLDLLMDKNWDMTVQKVYPFINGINSVQRIAE 231


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 256 QSVQKAMAIPTVEAAVGQVG-AIYSKVKG 339
           Q V+ A +  TVE+AVG+ G A Y+ + G
Sbjct: 50  QGVKSAFSDDTVESAVGRSGSAFYNAILG 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,256
Number of Sequences: 5004
Number of extensions: 39853
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)