Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_E09
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical ... 31 0.71
AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical ... 31 0.94
Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p... 29 2.9
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p... 29 2.9
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos... 29 2.9
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ... 29 2.9
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 29 3.8
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 29 3.8
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 27 8.7
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 8.7
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 8.7
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 8.7
>AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical
protein Y54G2A.11a protein.
Length = 482
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 388 PRDIGDSYEFKVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFL 567
PR + Y F+VP D L + +E + +K+ V P + S K KH+ ++ L
Sbjct: 206 PRPVPSDYLFEVPAFPEDFGLQRQNSEKRSDVWKEFVKPAMRKAPLSDKKKHLHMLRDIL 265
Query: 568 VR 573
R
Sbjct: 266 RR 267
>AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical
protein K08A2.1 protein.
Length = 411
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 78 VPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVI 209
VP+ P +++ + A PSP A PPPRL +PV+
Sbjct: 262 VPTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEPVL 305
>Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical
protein D2085.3 protein.
Length = 666
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/91 (21%), Positives = 36/91 (39%)
Frame = +1
Query: 19 DDFRLPNGKICTSESEFGNAYRLARSCPQVQAPEHSHHQLHDASLPPACEQVFGGISPLR 198
DD +PNG ES GN + P +Q + +++ + Q G +
Sbjct: 384 DDVVIPNGAHIPKESIIGNGVMYPKELPNIQNTAIFKNAINEETFEKLSSQPIGNVH--- 440
Query: 199 TLSLFMDMSPFRQACIHAVTGTDAAKDLHEA 291
+S F + PF + ++ T +D E+
Sbjct: 441 -VSKFRNGGPFWRRSVNGKTNFALEEDDSES 470
>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 169 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 303
++ GG L LSL + M F+ A ++ + DAA DL ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143
>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 169 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 303
++ GG L LSL + M F+ A ++ + DAA DL ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143
>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
and X-chromosomeassociated MIX-1 protein protein.
Length = 1244
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 169 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 303
++ GG L LSL + M F+ A ++ + DAA DL ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143
>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 169 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 303
++ GG L LSL + M F+ A ++ + DAA DL ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 318 SCHSSSQITSFVQIFSGVCAGDGVNTRLSERRHVHEQ*QGPERRYSP-EDLFAGGGEGCI 142
S H S + + S V A +GV R++ + GP ++ +P EDL G GE C+
Sbjct: 179 SDHVSYSSFCHLSVRSCVLAKNGVRLRVATK--------GPCKKRNPCEDLRCGPGEDCV 230
Query: 141 VQLVMGV 121
V + G+
Sbjct: 231 VNQINGI 237
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 318 SCHSSSQITSFVQIFSGVCAGDGVNTRLSERRHVHEQ*QGPERRYSP-EDLFAGGGEGCI 142
S H S + + S V A +GV R++ + GP ++ +P EDL G GE C+
Sbjct: 187 SDHVSYSSFCHLSVRSCVLAKNGVRLRVATK--------GPCKKRNPCEDLRCGPGEDCV 238
Query: 141 VQLVMGV 121
V + G+
Sbjct: 239 VNQINGI 245
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +1
Query: 157 PACEQVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGRGMAALALTGL 336
PAC Q GG + + L + + +Q CI + A+ + C G +A + L
Sbjct: 84 PACNQQCGGNNQVILLPQTNNCNQCQQQCISSCATPICAQSCNNQCSSSCGNSAPQIVVL 143
Query: 337 LPAVLPNVCVKC 372
P N C C
Sbjct: 144 QPQ--QNQCGSC 153
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +2
Query: 38 MERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPP-ANRSSGEYRRSGPCHCS 214
+E+ L K ++ P P TP +S P PPP + ++S E ++S
Sbjct: 731 LEKERLEKKAAAAAAANPNPTPIPPTPATPHSSAQQQPIPPPLSTQTSAEIQQSAQQPSV 790
Query: 215 WTCRLSDKRVFTPSPAQ 265
+++ +P+ AQ
Sbjct: 791 PVTMIANIPAMSPTSAQ 807
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +2
Query: 38 MERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPP-ANRSSGEYRRSGPCHCS 214
+E+ L K ++ P P TP +S P PPP + ++S E ++S
Sbjct: 731 LEKERLEKKAAAAAAANPNPTPIPPTPATPHSSAQQQPIPPPLSTQTSAEIQQSAQQPSV 790
Query: 215 WTCRLSDKRVFTPSPAQ 265
+++ +P+ AQ
Sbjct: 791 PVTMIANIPAMSPTSAQ 807
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 75 RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 170
R PS P+ + A A PSPA R PPR RT
Sbjct: 1631 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1661
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 75 RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 170
R PS P+ + A A PSPA R PPR RT
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 75 RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 170
R PS P+ + A A PSPA R PPR RT
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,946,486
Number of Sequences: 27780
Number of extensions: 370714
Number of successful extensions: 1322
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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