Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_E07
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   2.1  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   2.1  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   2.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   3.7  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   4.9  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   4.9  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   4.9  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    24   8.6  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 144  EAPWLRCLSSLCKLNQLASKRSFC 73
            +AP L  LS++C  +  + KR FC
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFC 990


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 335 VIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFL 159
           +++ T  +KL  D  H   L IP S    F+E   + V   CD D      + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 203 QSHTLGQRTTCTPPESCSKVKKE*LTNM-HENHQLLIYV 316
           QSH L    + TP  +   ++ E L+NM H NH +L YV
Sbjct: 270 QSHPLSSVASGTPSANAILLE-ELLSNMLHANHPILDYV 307


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 191 RISRQSHTLGQRTTCTPPESCSKVKK 268
           ++ ++S     +T  TPP+ CS +KK
Sbjct: 36  QMKKESLAASVKTPSTPPKECSHLKK 61


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 184 NVTNLTSESHLGPTDDLHTSRKLFQS 261
           +V+ L+S SHL PT    +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 135 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 242
           K  + S  + FR     RD+   +  P +N  P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 281 WLTIPSSLWNSFLEVCR 231
           WL+IP+S W++F +  +
Sbjct: 507 WLSIPASRWSTFYDASK 523


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 184 NVTNLTSESHLGPTDDLHTSRKLFQSEEGI 273
           ++TNLT        D L T   LF++E+G+
Sbjct: 573 SLTNLTFNDRCALVDLLITKLALFEAEKGV 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,443,951
Number of Sequences: 5004
Number of extensions: 26018
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)