Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_D24
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 30 0.17
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 27 1.6
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 26 3.6
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 4.8
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 25 4.8
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 6.3
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 6.3
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 25 8.4
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 8.4
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 8.4
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 25 8.4
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 8.4
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 8.4
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.3 bits (65), Expect = 0.17
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +1
Query: 112 NMSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNAESNT 291
+++V A DS S D+D K + + EP G + N L NA+ +T
Sbjct: 279 SVNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALANLFQNLYKNADDDT 338
Query: 292 INFSYKLWT 318
K +T
Sbjct: 339 RRAMMKSYT 347
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 27.1 bits (57), Expect = 1.6
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +2
Query: 254 QLPSCLTMPNLTQLISLTNYGPLGTKI*FKVVSH*EFRLILDDKKDCKIINKHDDLYMTL 433
QLP L N + T G L TK F++ + R DKKD I N D +Y L
Sbjct: 118 QLPLSLGGMNKAAVFISTESG-LETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTIL 176
Query: 434 SKDLD 448
DL+
Sbjct: 177 CPDLE 181
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.8 bits (54), Expect = 3.6
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = +1
Query: 64 KLKILTTLSVIIATFFNMSVEA----SDSGKSDRKLYNSVITADYDDATKRCEQLQSEPD 231
++ ++TT S++ T +A SDS + + +++ YD+ + + D
Sbjct: 323 EVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMAYDEENPYVDVVPKAMD 382
Query: 232 GSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCF 351
S V +N A+ +T+N +Y + +T N V F
Sbjct: 383 ESENPDFGVDTEVNMADGSTMNENYSIISTAAANGVYEYF 422
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 161 TIQ*LPLTTMMQPKDASNFNPNRMVR 238
T++ PL+ M + KD+S F NR+++
Sbjct: 209 TVEPTPLSFMSEMKDSSQFYANRVMK 234
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 4.8
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 184 YDDATKRCEQLQSEP--DGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQS 345
Y++ RC+ + P D S+++ T T+ +NN + N K +T G Q+++ S
Sbjct: 525 YENHKNRCDPINYVPMNDASHVM--TCTKAMNNFKRNATFMRTKSYTFG-QSVLAS 577
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 190 DATKRCEQLQSEPDGSYIIKNTVTEL 267
+ATKRC+QL E D I++N V +L
Sbjct: 439 EATKRCDQLNREID---ILQNHVEKL 461
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 335 IFWCPVVHSL*EKLIVLDSALLSSSVTVFFMMYEPSGS 222
IFW + +K I +D+ +L+ T +EP G+
Sbjct: 324 IFWTEIYDQSEKKWIAVDAVVLNGVYTNDMTWFEPKGA 361
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 300 EINCVRFGIVKQLGNCVLYDVRTIRFGLKLLASFGCIIV 184
++ + FG +QL C LYD+ +G ++ +FG +V
Sbjct: 114 KLTSMHFG--QQLNPC-LYDIEKFEYGHEIFCTFGVRLV 149
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 238 YIIKNTVTELLNNAESNT 291
YII TVTE ++N +S+T
Sbjct: 481 YIIPETVTEAISNYDSST 498
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 359 EFRLILDDKKDCKIINKHDDLYMTL 433
E+ L+L + K+IN HD ++ TL
Sbjct: 458 EWVLLLQRRTGGKLINMHDPIFQTL 482
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 106 FFNMSVEASDSGKSDRKLYNSVITA 180
F+ + +AS+ + RKLYNS + A
Sbjct: 5 FYEVKADASNQMEQVRKLYNSFMAA 29
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 8.4
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 172 ITADYDDATKRCEQLQSEPDGSYIIKNTVT-ELLNNAESNTINFSYKLWTT 321
+ D DA K C + Q + ++K VT E L S+ IN K+ TT
Sbjct: 468 VEKDDRDAIKECVETQLNKQINLLVKKRVTEENLEQEISSIINDLPKISTT 518
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 199 KRCEQLQSEPDGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQS 345
K E+L + + ++ N+V LN+ NF Y +W+ N QS
Sbjct: 803 KMNEELSTTDEAVKLLANSV---LNDVHPRVPNFRYFIWSVPMNNWFQS 848
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,322
Number of Sequences: 5004
Number of extensions: 38023
Number of successful extensions: 105
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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