Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_D24
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   0.77 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   0.77 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   0.77 
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              24   1.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.4  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   5.4  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   7.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.1  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   9.4  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   9.4  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 19/94 (20%), Positives = 39/94 (41%)
 Frame = +1

Query: 94  IIATFFNMSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLN 273
           +I    NM +E +  G + R+ + + +    +DA  +      +    Y   N    +++
Sbjct: 177 VIQKAHNMELEPTP-GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEY--NNLKAMVVS 233

Query: 274 NAESNTINFSYKLWTTGHQNIVQSCFPLGVQTDT 375
            ++ + IN S  +   G QN+     P G +  T
Sbjct: 234 GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT 267


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 306 VREINCVRFGIVKQLGNCVLYDVRTIRFGLKLLASFGCIIVVSGNY 169
           V  +NC+R   +  L  C+L   +T      LLAS     ++S  Y
Sbjct: 421 VNSVNCLRESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSAAY 466


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 306 VREINCVRFGIVKQLGNCVLYDVRTIRFGLKLLASFGCIIVVSGNY 169
           V  +NC+R   +  L  C+L   +T      LLAS     ++S  Y
Sbjct: 459 VNSVNCLRESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSAAY 504


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 491 MVVLVAICVCITXFGLD 441
           +V++ AICVC++   LD
Sbjct: 4   IVIISAICVCVSAMTLD 20


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
          protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 88 TELLKSSISFRIQAYVLSSCNPTTSNKHK 2
          ++LLKS  S    AY    C PT     K
Sbjct: 6  SQLLKSRESLLSNAYKQGFCQPTQRTMSK 34


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 403 NNFTVLLIV*YQSELLMGNNFELY 332
           N+ TV  I  YQ     GNNF +Y
Sbjct: 275 NSSTVGTIFGYQDMRNRGNNFPVY 298


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 491 MVVLVAICVCITXFGLD 441
           +V++ AICVC+    L+
Sbjct: 4   IVIISAICVCVGALTLE 20


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 60  NEIEDFNNSVGYNCDI 107
           N +ED   ++ Y+CD+
Sbjct: 119 NLLEDIYETLSYDCDV 134


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 488 VVLVAICVCITXFGLD 441
           V++ AICVC+    L+
Sbjct: 5   VIISAICVCVGALTLE 20


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 488 VVLVAICVCI 459
           V++ AICVC+
Sbjct: 5   VIIFAICVCV 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,424
Number of Sequences: 438
Number of extensions: 2500
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)