Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_D20
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   100   8e-23
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   100   8e-23
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   2.2  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   3.8  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    24   8.8  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    24   8.8  
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    24   8.8  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  100 bits (239), Expect = 8e-23
 Identities = 40/61 (65%), Positives = 50/61 (81%)
 Frame = +1

Query: 40  EHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKY 219
           EHIDLGIKYDPSIGIYG+DFYVV+ RPG  VA R+ + G+VG+ H++  ED + WF+QKY
Sbjct: 108 EHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKY 167

Query: 220 D 222
           D
Sbjct: 168 D 168


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  100 bits (239), Expect = 8e-23
 Identities = 40/61 (65%), Positives = 50/61 (81%)
 Frame = +1

Query: 40  EHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKY 219
           EHIDLGIKYDPSIGIYG+DFYVV+ RPG  VA R+ + G+VG+ H++  ED + WF+QKY
Sbjct: 108 EHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKY 167

Query: 220 D 222
           D
Sbjct: 168 D 168


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 236 LSMIPSYFC-WNHFIASSFVRRW 171
           LS I S+   W+H+I++SF+ +W
Sbjct: 509 LSTIHSFINNWSHYISASFLSKW 531


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 75  NWNLWTGLLRRTWPARFQRSTQK 143
           NW+    L R  WP  F RS+Q+
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQ 666


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 44  TLTWVSSTIPQLEFMDWTFT 103
           T  WVSS    +EF+D+ F+
Sbjct: 382 TTVWVSSPHETIEFLDYYFS 401


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 209 WNHFIASSFVRRWGNPTFPVL 147
           WN+ I  S    W  P+FP++
Sbjct: 406 WNNLIDDSSPLLWREPSFPLI 426


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 53  WVSSTIPQLEFMDWTFTSYLAGQVS 127
           W+S+ +P  EF+  + TS  A   S
Sbjct: 128 WISANVPNAEFVSVSSTSQAAALAS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,068,809
Number of Sequences: 5004
Number of extensions: 19651
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)