Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_D20
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   102   9e-23
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   101   2e-22
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    30   0.61 
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    26   7.5  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    26   7.5  
Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  102 bits (244), Expect = 9e-23
 Identities = 44/62 (70%), Positives = 52/62 (83%)
 Frame = +1

Query: 40  EHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKY 219
           EHIDLGIKYDPSIGIYG+DFYVVL R G  +A RRR  G+VG  HR+ +E+++KWFQQKY
Sbjct: 118 EHIDLGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKY 177

Query: 220 DG 225
           DG
Sbjct: 178 DG 179


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  101 bits (241), Expect = 2e-22
 Identities = 43/62 (69%), Positives = 50/62 (80%)
 Frame = +1

Query: 40  EHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKY 219
           EHIDLGIKYDP IGIYG+DFYVVL R G  V+ RRR  G++G  HR+ KE+ +KWFQQKY
Sbjct: 118 EHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKY 177

Query: 220 DG 225
           DG
Sbjct: 178 DG 179


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 67  DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 189
           DP  GI G+  + V G   F +A R+  +GK     RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
           protein ZC84.1 protein.
          Length = 1556

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -3

Query: 189 FLCEAVGKSHFSCLTP-SVC 133
           F C A+G  H  C TP SVC
Sbjct: 394 FQCTAIGSQHLCCPTPGSVC 413


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 236  LSMIPSYFCWNHFIASSFVR 177
            LS + ++  WNH I SSF++
Sbjct: 2159 LSSLDNFLSWNHPIVSSFIK 2178


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 72  LNWNLWTGLLRRTWP--ARFQRSTQKA*DRKSGI 167
           LNW++  G+ RR+W   A+ Q + Q+A  +  G+
Sbjct: 619 LNWDVPNGVTRRSWSGNAKAQEAIQRAEKQVDGL 652


>Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical
           protein F02H6.6 protein.
          Length = 293

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 159 FSCLTPSVCYVETWPAKYDVKVQSI 85
           F C T S  +  TWPA YD+ ++ +
Sbjct: 260 FKCNTTSGAWYNTWPA-YDIDMKEV 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,874,194
Number of Sequences: 27780
Number of extensions: 108143
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)