Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_D18
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    29   0.47 
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   7.6  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.6  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    25   7.6  

>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 427 VTPIKFFVKPV-TREPEIIKAILPQSHMFEWREHFW 323
           +TP  F+ K + TR P IIK+ LP+S   +W+ + W
Sbjct: 27  LTPKDFYDKFIATRTPVIIKSSLPES---DWKGYLW 59


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 174 FNKILELLFIKYNSLS*MCVLLILLH 97
           +N I+E+  IKYNSL+ +  LL  L+
Sbjct: 684 YNTIMEVWNIKYNSLNALARLLSALY 709


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +2

Query: 386 FPGYRFDK--KFDGCHYIYSQE 445
           FP   FD   KF G HY YS+E
Sbjct: 73  FPYKEFDPVLKFPGIHYTYSRE 94


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 279 FSSFHLLVLTGWNHIQKCSLHSNIWDCGSIAL 374
           F S +  +  G+ HI    ++ N  DCG   L
Sbjct: 30  FDSVYAALQCGYRHIDSAQMYHNEADCGRAIL 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,158
Number of Sequences: 5004
Number of extensions: 46265
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)