Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_D18
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    29   3.4  
03_06_0388 + 33564096-33564485,33564642-33564812,33565125-335651...    28   5.9  
02_02_0642 + 12585531-12586126,12586292-12586371,12586481-125865...    28   5.9  
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    27   7.7  

>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 281  LLLSFAGPYWMESYPEMFSPFKHMGLWEYCFDNFRFPGYRF 403
            L + F G   +E +P+ F+PF H G    C     FPG  F
Sbjct: 1526 LRIKFVGRRILEQFPDQFTPFLHFG----CNLQQPFPGTLF 1562


>03_06_0388 +
           33564096-33564485,33564642-33564812,33565125-33565145,
           33565260-33565467,33566156-33566346,33566465-33566584,
           33566703-33566936
          Length = 444

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 285 SFHL---LVLTGWNHIQKCSLHSNIWDCGSIALIISGSLVTGLTKNLMGVTISTAKNIMQ 455
           SFH    L + G   +    +H ++ DC  + L        G + N  G+ I+ +KN+  
Sbjct: 197 SFHTCDNLSVNGLKMVNSQQIHMSVEDCTGVELAHLSISAPGTSPNTDGIHITHSKNVQV 256

Query: 456 S 458
           S
Sbjct: 257 S 257


>02_02_0642 +
           12585531-12586126,12586292-12586371,12586481-12586539,
           12587190-12587462,12587876-12587914,12588086-12588231,
           12589495-12589696
          Length = 464

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 244 HWSQ--YHLCGGFISPPFICWSLLDGIISRNVLSIQTYGIVGVLL 372
           HW     H+C   I  P + W   DG I+  V    ++ I+G ++
Sbjct: 285 HWGSGCSHVCKSHIYHPILPWLNSDGSINSTVYECLSHRIIGYVM 329


>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 266 VGALFLLLS--FAGPYWMESYPEMFSPFKHMGLWEYCFDNFRFPGYRFDKK 412
           +G ++L+L   F+ P  +   P +  PF H    E     FR P Y+F  K
Sbjct: 426 IGCIYLMLLSIFSSPLCLVLGPGVTIPFVHFSGEESLIQLFREPFYKFSLK 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,826,902
Number of Sequences: 37544
Number of extensions: 277928
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)