Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_D18
(561 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74031-10|CAA98450.1| 399|Caenorhabditis elegans Hypothetical p... 31 0.43
Z82278-8|CAB05251.2| 312|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr... 28 4.0
AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine r... 28 5.3
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 27 7.0
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 27 7.0
AL117206-6|CAB60450.1| 734|Caenorhabditis elegans Hypothetical ... 27 7.0
AF039046-11|AAD34651.3| 388|Caenorhabditis elegans Hypothetical... 27 7.0
Z81095-3|CAB03159.2| 494|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical ... 27 9.2
>Z74031-10|CAA98450.1| 399|Caenorhabditis elegans Hypothetical
protein F32D8.10 protein.
Length = 399
Score = 31.5 bits (68), Expect = 0.43
Identities = 17/76 (22%), Positives = 36/76 (47%)
Frame = +3
Query: 297 LVLTGWNHIQKCSLHSNIWDCGSIALIISGSLVTGLTKNLMGVTISTAKNIMQSXIGCCL 476
+++T W +I K S+ S W + + SL+T + + + + +++ +G CL
Sbjct: 294 VIITIWEYIDKESIFSEDWIAFYVLSVDVISLLTIVASSARLPIYAYFQPLLRKEMGQCL 353
Query: 477 DG*WLCSFRDSALMLS 524
W C F ++ +S
Sbjct: 354 GDWWCCCFSENDKKMS 369
>Z82278-8|CAB05251.2| 312|Caenorhabditis elegans Hypothetical
protein M162.8 protein.
Length = 312
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 305 YWMESYPEMFSPFKHMGLWEYCFDNFRFP 391
YW+ + E + ++ GL YC +NF+ P
Sbjct: 73 YWIHLHSECWCSTRNTGLGGYCTNNFKNP 101
>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical
protein DH11.3 protein.
Length = 1270
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +3
Query: 258 SPMWGLYFSSFHLLVL---TGWNHIQKCSLHSN--IWDCGSIALIISGSLVTGLTKNLMG 422
S W +F L V+ TG + C L+ N I G + LI++ VTG L+G
Sbjct: 299 STFWAGFFDGLALFVIYFITGISLFFGCRLYFNQEIGKAGDVILIVNTICVTGYFLGLLG 358
Query: 423 VTISTAKNIMQSXI 464
+S+ + S +
Sbjct: 359 PHMSSLQQAATSFL 372
>AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine
receptor, class z protein5 protein.
Length = 351
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 338 PFKHMGLWEYCFDNFRFPGYRFDKKFDGCHYIYSQEYY 451
PF G W++ +++ PGY F FD +Y YY
Sbjct: 177 PFLGNGSWDFGNESYLEPGYNFPFSFDS---LYMTIYY 211
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = +1
Query: 238 YAHWSQYHLCGGFISPPFI-----CWSLLDGIISRNVLSIQT 348
+ H +LCG ++PP WS DG+ + VL I T
Sbjct: 684 HRHLKNVYLCGNELTPPVAKLLIQKWSKFDGLTPKPVLHIHT 725
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = +1
Query: 238 YAHWSQYHLCGGFISPPFI-----CWSLLDGIISRNVLSIQT 348
+ H +LCG ++PP WS DG+ + VL I T
Sbjct: 721 HRHLKNVYLCGNELTPPVAKLLIQKWSKFDGLTPKPVLHIHT 762
>AL117206-6|CAB60450.1| 734|Caenorhabditis elegans Hypothetical
protein Y67A10A.9 protein.
Length = 734
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +2
Query: 236 ATLIGASITYVGALFLLLSFAGPYWMESYPEMFSPFKHMGLWEYCFDNFRF 388
A I +++ + L LL P W + E H GLW C +F F
Sbjct: 16 ALAIHFTLSLIAFLLCLLGLISPSWQQVNLENGRTEHHHGLWLDCKRDFSF 66
>AF039046-11|AAD34651.3| 388|Caenorhabditis elegans Hypothetical
protein R09B5.12 protein.
Length = 388
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 336 LHSNIWDCGSIALIISGSLVTGLTKNLMGVTISTAKNIMQ 455
++ N+ CG ++ G G+ NL G T TAK +Q
Sbjct: 282 IYHNLHHCGFSPKLMIGINFYGIELNLKGATTITAKRFLQ 321
>Z81095-3|CAB03159.2| 494|Caenorhabditis elegans Hypothetical
protein F59F4.3 protein.
Length = 494
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 238 YAHWSQYHLCGGFISPPFICWSLLDGIISRNVLSI-QTY 351
YA+ Q+ LC F+ W++L G++S V+ I TY
Sbjct: 431 YAYCLQWQLCCRLGFFRFVFWAMLLGVVSTTVMFIPMTY 469
>AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical
protein Y39E4A.2b protein.
Length = 410
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 209 DNEYPKASNATLIGASITYVGALFLLLSFAGPYWMES 319
D +Y K A + ++ + A+F+ F G +W +S
Sbjct: 92 DEKYQKGRRAEKVLWAVAALSAVFIAAEFVGGFWAQS 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,259,415
Number of Sequences: 27780
Number of extensions: 257041
Number of successful extensions: 664
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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