Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_D13
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 231 7e-62
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 0.44
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.8
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 4.1
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 4.1
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 5.4
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 5.4
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 7.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.5
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 231 bits (565), Expect = 7e-62
Identities = 111/147 (75%), Positives = 126/147 (85%)
Frame = +2
Query: 203 IINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTII 382
IINT YSNKEIFLRELISN+SDALDKIRY+SL+DP LD+ K+L+I+I P+K L+I
Sbjct: 20 IINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLFIRITPDKENKILSIR 79
Query: 383 DTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSSYLVADRVTVHS 562
DTGIGMTK DL+NNLG IAKSGTK FMEA +GADISMIGQFGVGFYS+YLVAD+V V S
Sbjct: 80 DTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADISMIGQFGVGFYSAYLVADKVQVVS 139
Query: 563 KHNDDEQYVWESSAGGSFTVRPDSGEP 643
KHNDDEQY+WESSAGGSFTV D+ P
Sbjct: 140 KHNDDEQYIWESSAGGSFTVTLDTDGP 166
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 148 AEVETFAFQAEIAQLMSL 201
+ ETF F+AEI+QLMSL
Sbjct: 2 SNTETFKFEAEISQLMSL 19
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +2
Query: 221 SNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGM 400
+N + R++++N L KI DPSK ++Y K+ + + L D+GI +
Sbjct: 2448 NNTKFISRDIVANG---LSKILILKDYDPSKAVRKPKIYSKVSTEERDFNLEQFDSGIDL 2504
Query: 401 TKADLVNNLG 430
+ L+ +G
Sbjct: 2505 SVKFLLEGIG 2514
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 206 INTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIK 343
+N S +EI L++ I + D I+Y S S ++ +Y+K
Sbjct: 377 LNEQISKEEIDLQKKIEKRNSTYDLIKYRSRVHTSLIEERNSIYLK 422
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -2
Query: 459 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 301
KA++P F + +AL+ PI ++ I +F+ IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 358 LVGNDLDVQLFATIEF*RIRERFIPDFV*SVR*IGNQLTKENFFV 224
LV + LDV F + ++ F+ D+ SVR N+ K NFF+
Sbjct: 295 LVISMLDVDGFRIDKATQMTVDFLVDWAKSVRLCANRFNKSNFFI 339
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 186 SAYVPVSSTPFTPTKKF 236
S YV +SS P TPT KF
Sbjct: 3205 SFYVFISSVPLTPTNKF 3221
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 436 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 329
DG V I G +DDR+ L+ + NDL+V L
Sbjct: 2 DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 298 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 426
H S K +R+ D + +ER H+ +R+R YD G F + +
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +2
Query: 236 FLRELISNSSDALDKIRYESL 298
F+R+++ +D L+K+R++SL
Sbjct: 224 FIRKVVLTKADGLEKLRFQSL 244
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +1
Query: 340 QDHSQQERGHSYDHRYRYWYDQGRFGEQF 426
+DH++++ H+ +Y YD R E +
Sbjct: 603 KDHTKEQAWHAMQQGIKYMYDNWRIWENY 631
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 23 STETNVRYFAL*NTCVKNPLV 85
++ETN+ YFA + VK+PL+
Sbjct: 876 NSETNLNYFATLDAFVKSPLM 896
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -2
Query: 423 LFTKSALVIPIPVSMIVRVPSFLLGMILM 337
LFT+ L IP+ +S+++ S+L+ ++M
Sbjct: 766 LFTELCLTIPVRLSLLLPYMSYLMRPLVM 794
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,835
Number of Sequences: 5004
Number of extensions: 58239
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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