Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_D08
(583 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81506-4|CAB04131.1| 191|Caenorhabditis elegans Hypothetical pr... 31 0.45
U53343-1|AAA96219.2| 396|Caenorhabditis elegans Kinesin-like pr... 31 0.60
AB024340-1|BAA96455.1| 396|Caenorhabditis elegans kinesin like ... 31 0.60
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 27 7.4
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 27 7.4
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 27 9.7
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 27 9.7
>Z81506-4|CAB04131.1| 191|Caenorhabditis elegans Hypothetical
protein F16H6.5 protein.
Length = 191
Score = 31.5 bits (68), Expect = 0.45
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 118 DKELKIEENPRVYCGRHLANARMVLCYDTVEKRAQSYLDANIISAGDL 261
DK+ KI E RV C AR + + V K Y+D+N GDL
Sbjct: 116 DKKGKIPEGGRVKCAGTETGARSNVKCEEVAKEVNEYIDSNKDKFGDL 163
>U53343-1|AAA96219.2| 396|Caenorhabditis elegans Kinesin-like
protein protein 13 protein.
Length = 396
Score = 31.1 bits (67), Expect = 0.60
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -1
Query: 160 RNRPEDFPQFSTLCRGRQHSPAPQRSGNTAETSLKFQYVGMKTTARVRIRRVL 2
RNRP+ + S+L R Q P + G + T LK QY+ + + R+R L
Sbjct: 298 RNRPKSISRNSSLTRAAQPMPIDRGRGGSLFTQLKEQYMTLSDKQK-RLREKL 349
>AB024340-1|BAA96455.1| 396|Caenorhabditis elegans kinesin like
protein KLP-13 protein.
Length = 396
Score = 31.1 bits (67), Expect = 0.60
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -1
Query: 160 RNRPEDFPQFSTLCRGRQHSPAPQRSGNTAETSLKFQYVGMKTTARVRIRRVL 2
RNRP+ + S+L R Q P + G + T LK QY+ + + R+R L
Sbjct: 298 RNRPKSISRNSSLTRAAQPMPIDRGRGGSLFTQLKEQYMTLSDKQK-RLREKL 349
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 199 HSRVPCVRWPNDVRNRPEDFPQFSTLCRGRQ-HS 101
HS + C P P+ + QFS LCR R+ HS
Sbjct: 177 HSHIHCSLKPFRCHLCPKSYTQFSNLCRHRRVHS 210
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 199 HSRVPCVRWPNDVRNRPEDFPQFSTLCRGRQ-HS 101
HS + C P P+ + QFS LCR R+ HS
Sbjct: 177 HSHIHCSLKPFRCHLCPKSYTQFSNLCRHRRVHS 210
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
protein F08B12.3c protein.
Length = 1086
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 184 CVRWPNDVRNRPEDFPQFSTLCRGRQ 107
C+R ND R+ P+DFP FS G+Q
Sbjct: 62 CIRVVNDERSYPDDFP-FSEEEAGKQ 86
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
protein F08B12.3b protein.
Length = 1107
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 184 CVRWPNDVRNRPEDFPQFSTLCRGRQ 107
C+R ND R+ P+DFP FS G+Q
Sbjct: 83 CIRVVNDERSYPDDFP-FSEEEAGKQ 107
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
protein F08B12.3a protein.
Length = 1119
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 184 CVRWPNDVRNRPEDFPQFSTLCRGRQ 107
C+R ND R+ P+DFP FS G+Q
Sbjct: 83 CIRVVNDERSYPDDFP-FSEEEAGKQ 107
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 184 CVRWPNDVRNRPEDFPQFSTLCRGRQ 107
C+R ND R+ P+DFP FS G+Q
Sbjct: 83 CIRVVNDERSYPDDFP-FSEEEAGKQ 107
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
potassium channel Slo-2 protein.
Length = 1119
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 184 CVRWPNDVRNRPEDFPQFSTLCRGRQ 107
C+R ND R+ P+DFP FS G+Q
Sbjct: 83 CIRVVNDERSYPDDFP-FSEEEAGKQ 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,802,844
Number of Sequences: 27780
Number of extensions: 229242
Number of successful extensions: 513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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