Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_D05
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 28 0.61
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 2.5
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 26 3.3
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 3.3
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 25 5.7
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 5.7
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 7.5
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 25 7.5
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 24 9.9
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 24 9.9
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 28.3 bits (60), Expect = 0.61
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 165 ILQHRRPRLPLMQLEAPCSFNFCSLRA 85
I Q LP + L +PCSF CSLRA
Sbjct: 48 IAQKSNISLPFLTL-SPCSFTICSLRA 73
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 26.2 bits (55), Expect = 2.5
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = -3
Query: 252 QRLCFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIXQ- 76
+++ FL L PLS ++ + ++P+ +QH++ L ++L P R++
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFPRRKENSWKRSLRSG 194
Query: 75 V*KLLC*LRKFRVRLFKHKN 16
+ +LL + F VR+ H+N
Sbjct: 195 LIELL--NQSFEVRMLTHEN 212
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 3.3
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 167 WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 274
W W GSVD SG N R S TS+LR+
Sbjct: 39 WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +2
Query: 17 FLCLKSRTLNFLNQHSSFYTCXIARREQKLKEHGASSCISGKRGRRCCNIWHWGS 181
F + +R L + Q + + I Q E A +C G G C +W+W +
Sbjct: 367 FKGMLARFLGYTMQLAPYTVETILPYIQSSAEAAALACSGGSDGVTCGYMWYWNN 421
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 192 MESTDPQCHILQHRRPRLPLMQLEAPCSF 106
M+S Q ++L RP LPL P F
Sbjct: 88 MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 5.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 350 TSPVLDIAPGSDLFCFIWN*NA 415
T P+ + P ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 24.6 bits (51), Expect = 7.5
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -3
Query: 459 FFLLHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTGDV*HHLMAWGLPWQQQSTVTQCCRP 280
+FLL D+FI+N + F + S + + + L +W + +++C +
Sbjct: 384 WFLLKNCDEFIENFSDFADEEYVFEICSTITSHSEQIFNKLESWDMSIYFDKDLSECEQA 443
Query: 279 LNF--RSMLVQQRLCF 238
NF +S V ++ C+
Sbjct: 444 TNFAVQSYFVTKQRCY 459
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 450 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 355
LH+I KF +L + + +++ AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150
>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 24.2 bits (50), Expect = 9.9
Identities = 6/19 (31%), Positives = 11/19 (57%)
Frame = -3
Query: 345 HHLMAWGLPWQQQSTVTQC 289
H ++ WG W++ T +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.2 bits (50), Expect = 9.9
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = +3
Query: 174 GGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP*GDAKH 353
G L+TP V PV+ G GSI++Q + A V P P +K
Sbjct: 630 GALVTPSVPPVIATVSKTNTTNTGVQQRGNV-GVTTTGSILTQSSPALPVQPVPLAYSKP 688
Query: 354 HPFSTS 371
P + S
Sbjct: 689 APTTKS 694
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,646
Number of Sequences: 5004
Number of extensions: 30619
Number of successful extensions: 62
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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