Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_D02
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5Y3 Cluster: Ribosomal protein L41; n=1; Bombyx mori...   221   1e-56
UniRef50_Q7JZM8 Cluster: 39S ribosomal protein L41, mitochondria...   117   2e-25
UniRef50_UPI00005842FC Cluster: PREDICTED: hypothetical protein;...    54   3e-06
UniRef50_Q8IXM3 Cluster: 39S ribosomal protein L41, mitochondria...    46   6e-04
UniRef50_Q502B0 Cluster: 39S ribosomal protein L41, mitochondria...    41   0.030
UniRef50_Q22BD8 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_Q5DB77 Cluster: SJCHGC02525 protein; n=1; Schistosoma j...    33   4.5  

>UniRef50_Q2F5Y3 Cluster: Ribosomal protein L41; n=1; Bombyx
           mori|Rep: Ribosomal protein L41 - Bombyx mori (Silk
           moth)
          Length = 162

 Score =  221 bits (540), Expect = 1e-56
 Identities = 111/157 (70%), Positives = 115/157 (73%)
 Frame = +1

Query: 85  VLINNFCKRNISVTATREGKRNFRKFVIPNKRGSVLHKKKQMTEDREFEIDKRGVRDIGY 264
           +L+NNFCK NISVTAT EGK NF KFV+PNK GSVLHKKKQMTED EFEIDKRGV DIGY
Sbjct: 6   ILMNNFCKSNISVTATSEGKSNFSKFVMPNKSGSVLHKKKQMTEDSEFEIDKRGVSDIGY 65

Query: 265 NLNGRFXXXXXXXXXXXXXNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAVYSKKIVTDF 444
           NLNGR              NLKDFDLKPYVSYKAADVIQSEFTPSQLFDAVYSKKIVTDF
Sbjct: 66  NLNGRLVMVPEMIPEIIVPNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAVYSKKIVTDF 125

Query: 445 KQGKLDXXXXXXXXXXXXXXXXXXXXXRAKQTGSDIF 555
           KQGKLD                     RAKQTGSD+F
Sbjct: 126 KQGKLDEEGNPMEPSEEESLKPEEAIIRAKQTGSDMF 162


>UniRef50_Q7JZM8 Cluster: 39S ribosomal protein L41, mitochondrial
           precursor; n=7; Endopterygota|Rep: 39S ribosomal protein
           L41, mitochondrial precursor - Drosophila melanogaster
           (Fruit fly)
          Length = 166

 Score =  117 bits (282), Expect = 2e-25
 Identities = 67/151 (44%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
 Frame = +1

Query: 106 KRNISVTATREGKRNFRKFVIPNKRGSVLHKKKQMT-EDREFEIDKRGVRDIGYNLNGRF 282
           +R IS ++  EGKRNFRKF   NKRG+ + K+ Q T  +    I KRGVRD G  ++G++
Sbjct: 16  QRTISTSSVLEGKRNFRKFNAYNKRGTRVVKEAQKTLANPPVAIHKRGVRDTGILVDGQY 75

Query: 283 XXXXXXXXXXXXXNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAVYSKKIVTDFKQGKLD 462
                        +L    LKPYVSYKA DV+QSEFT   LF+AVYS+KI+ DFK GKL 
Sbjct: 76  VEIPEKIPDIIVPDLTGCKLKPYVSYKAPDVVQSEFTSLDLFNAVYSQKIIEDFKAGKLQ 135

Query: 463 XXXXXXXXXXXXXXXXXXXXXRAKQTGSDIF 555
                                RA++TGSDIF
Sbjct: 136 KDGSAKEPSVNEQLTPEEALQRARKTGSDIF 166


>UniRef50_UPI00005842FC Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 128

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
 Frame = +1

Query: 178 RGSVLHKKKQMTE-DREFEIDKRGVRDIGYNLNGRFXXXXXXXXXXXXXNLKDFDLKPYV 354
           RG+  HK+      ++ F  +   ++  GY +   +             NL+DF LK YV
Sbjct: 13  RGANRHKEMTSKRGNKNFHPNTSRIQPTGYGVRTTWKNVKEMIPEIVVPNLEDFPLKAYV 72

Query: 355 SYKAADVIQSEFTPSQLFDAVYSKKIVTDFKQGKLD 462
           SYK  D  Q   TP  +FD   + +++ D K GK D
Sbjct: 73  SYKCPDTQQDPLTPRDIFDKCLAPQVLEDLKSGKYD 108


>UniRef50_Q8IXM3 Cluster: 39S ribosomal protein L41, mitochondrial
           precursor; n=12; Tetrapoda|Rep: 39S ribosomal protein
           L41, mitochondrial precursor - Homo sapiens (Human)
          Length = 137

 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +1

Query: 241 RGVRDIGYNLNG-RFXXXXXXXXXXXXXNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAV 417
           RG + IG+  +G RF             +L  F LKPYVSY A +  ++  T +QLF   
Sbjct: 36  RGAKGIGFLTSGWRFVQIKEMVPEFVVPDLTGFKLKPYVSYLAPESEETPLTAAQLFSEA 95

Query: 418 YSKKIVTDFKQGKLD 462
            +  I  DFK G  D
Sbjct: 96  VAPAIEKDFKDGTFD 110


>UniRef50_Q502B0 Cluster: 39S ribosomal protein L41, mitochondrial
           precursor; n=9; Euteleostomi|Rep: 39S ribosomal protein
           L41, mitochondrial precursor - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 135

 Score = 40.7 bits (91), Expect = 0.030
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +1

Query: 241 RGVRDIGYNLNGR-FXXXXXXXXXXXXXNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAV 417
           RG R  G   + R F             NL+ F+LK YVSYK     +   TP +LF+ V
Sbjct: 34  RGARPTGIVTSSRKFIPIRAMIPEFAVPNLEGFNLKAYVSYKTPAGTEEPMTPEKLFNEV 93

Query: 418 YSKKIVTDFKQG 453
            + +I  D ++G
Sbjct: 94  VAPQIQRDIEEG 105


>UniRef50_Q22BD8 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 4414

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 19/51 (37%), Positives = 31/51 (60%)
 Frame = +2

Query: 110  ETFL*QRLEKVKGILENL*YQTREVLYFTKKNK*PRIGNLKSTNEELEILA 262
            + +L QR +KV GIL+ + YQ+ + + +  +NK PR    K  NE +E L+
Sbjct: 1490 QQYLYQRPDKVIGILQKMKYQSEDFIKYLFRNKKPR--RCKKFNENIEYLS 1538


>UniRef50_Q5DB77 Cluster: SJCHGC02525 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC02525 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 148

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 337 DLKPYVSYKAADVIQSEFTPSQLFDAVYSKKIVTDFKQGKLD 462
           +LKPYVS+ +  + +   T   LF+  YS+KI    K G  D
Sbjct: 94  ELKPYVSWHSTTIGEGPLTAEVLFNKRYSRKITEMCKSGASD 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,926,251
Number of Sequences: 1657284
Number of extensions: 8886868
Number of successful extensions: 17637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17628
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)