Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_D02
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0811 - 7440413-7440712,7441285-7441398,7441448-7441705,744...    27   9.8  

>12_01_0811 -
           7440413-7440712,7441285-7441398,7441448-7441705,
           7441825-7441998,7442344-7442514,7442607-7442874,
           7443171-7443937,7444437-7445123
          Length = 912

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 97  NFCKRNISVTATREGKRNFRKFV-IPNKRGSVLHKKKQMTEDREFEIDKRGV 249
           NF +R  S T T +  +N R  + +P+  GSV++KK    ++   E+D + +
Sbjct: 319 NFGERTYS-TLTSDRAKNMRYSMRVPDFSGSVINKKVDSQKEEVKEVDSQDI 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,585,664
Number of Sequences: 37544
Number of extensions: 210542
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)