Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_D02
         (652 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040035-1|AAH40035.1|  137|Homo sapiens mitochondrial ribosomal...    46   9e-05
AY232291-1|AAP69986.1|  137|Homo sapiens proliferation-inducing ...    46   9e-05
AL365502-8|CAI14583.1|  137|Homo sapiens mitochondrial ribosomal...    46   9e-05

>BC040035-1|AAH40035.1|  137|Homo sapiens mitochondrial ribosomal
           protein L41 protein.
          Length = 137

 Score = 46.4 bits (105), Expect = 9e-05
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +1

Query: 241 RGVRDIGYNLNG-RFXXXXXXXXXXXXXNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAV 417
           RG + IG+  +G RF             +L  F LKPYVSY A +  ++  T +QLF   
Sbjct: 36  RGAKGIGFLTSGWRFVQIKEMVPEFVVPDLTGFKLKPYVSYLAPESEETPLTAAQLFSEA 95

Query: 418 YSKKIVTDFKQGKLD 462
            +  I  DFK G  D
Sbjct: 96  VAPAIEKDFKDGTFD 110


>AY232291-1|AAP69986.1|  137|Homo sapiens proliferation-inducing
           gene 3 protein.
          Length = 137

 Score = 46.4 bits (105), Expect = 9e-05
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +1

Query: 241 RGVRDIGYNLNG-RFXXXXXXXXXXXXXNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAV 417
           RG + IG+  +G RF             +L  F LKPYVSY A +  ++  T +QLF   
Sbjct: 36  RGAKGIGFLTSGWRFVQIKEMVPEFVVPDLTGFKLKPYVSYLAPESEETPLTAAQLFSEA 95

Query: 418 YSKKIVTDFKQGKLD 462
            +  I  DFK G  D
Sbjct: 96  VAPAIEKDFKDGTFD 110


>AL365502-8|CAI14583.1|  137|Homo sapiens mitochondrial ribosomal
           protein L41 protein.
          Length = 137

 Score = 46.4 bits (105), Expect = 9e-05
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +1

Query: 241 RGVRDIGYNLNG-RFXXXXXXXXXXXXXNLKDFDLKPYVSYKAADVIQSEFTPSQLFDAV 417
           RG + IG+  +G RF             +L  F LKPYVSY A +  ++  T +QLF   
Sbjct: 36  RGAKGIGFLTSGWRFVQIKEMVPEFVVPDLTGFKLKPYVSYLAPESEETPLTAAQLFSEA 95

Query: 418 YSKKIVTDFKQGKLD 462
            +  I  DFK G  D
Sbjct: 96  VAPAIEKDFKDGTFD 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,860,498
Number of Sequences: 237096
Number of extensions: 1297266
Number of successful extensions: 1703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1703
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)