Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_D02
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80836-11|AAB37899.1|  180|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF098995-13|AAC67476.2|   95|Caenorhabditis elegans Hypothetical...    28   5.0  

>U80836-11|AAB37899.1|  180|Caenorhabditis elegans Hypothetical
           protein B0432.3 protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
 Frame = +1

Query: 139 GKRNFRKFVIP--NKRGSVLHKKKQMTEDREFEIDKRGVRDIGYN--LNGRFXXXXXXXX 306
           G  N+ KF  P  N+    L  K Q    +E      GV+  G++    G F        
Sbjct: 37  GPMNYEKFKWPGQNREFPELSPKFQKLNPKELH-RYTGVQADGFHDEKTGEFVPVKEMRS 95

Query: 307 XXXXXNLKDFDLKPYVSYK 363
                NL  F L+PYVSY+
Sbjct: 96  ELVVPNLDGFKLRPYVSYR 114


>AF098995-13|AAC67476.2|   95|Caenorhabditis elegans Hypothetical
           protein F58E1.13 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 85  VLINNFCKRNISVTATREGKRNFRKFVIPNKRGSVLHKKKQMTEDREFEI 234
           VL+ N+   N  +  T +G + F KFV  N+    ++ K+ ++E  EF+I
Sbjct: 11  VLVINYITHNNELIYTPQGLK-FSKFVANNQNKVDIYIKETVSEKPEFDI 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,309,621
Number of Sequences: 27780
Number of extensions: 229169
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)