Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_D02
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 109 FYRNYLLKLGILDIFG 62
           FY+NYLL +  +D  G
Sbjct: 370 FYKNYLLNVSFIDAAG 385


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 109 FYRNYLLKLGILDIFG 62
           FY+NYLL +  +D  G
Sbjct: 460 FYKNYLLNVSFIDAAG 475


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 201 FFVKYRTSLVWYHKFSK-IP-FTFSSRCYRNVSFTEIIY*NLVS 76
           FF  Y+T L +YHK+ + +P +T     +  VS   +    L++
Sbjct: 417 FFSIYKTILDYYHKYKENLPKYTTEELNFPGVSIESVTVDKLIT 460


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 201 FFVKYRTSLVWYHKFSK-IP-FTFSSRCYRNVSFTEIIY*NLVS 76
           FF  Y+T L +YHK+ + +P +T     +  VS   +    L++
Sbjct: 417 FFSIYKTILDYYHKYKENLPKYTTEELNFPGVSIESVTVDKLIT 460


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 201 FFVKYRTSLVWYHKFSK-IP-FTFSSRCYRNVSFTEIIY*NLVS 76
           FF  Y+T L +YHK+ + +P +T     +  VS   +    L++
Sbjct: 43  FFSIYKTILDYYHKYKENLPKYTTEELNFPGVSIESVTVDKLIT 86


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 648 YCH*ITEEMFLIFLILKSILHYQX*FVIIK 559
           +C  IT   FL+F++L  I      F+++K
Sbjct: 78  HCMTITFASFLLFILLVQIAVAVYAFIVVK 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,731
Number of Sequences: 438
Number of extensions: 3118
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)