Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C22
         (651 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7SF02 Cluster: Predicted protein; n=1; Neurospora cras...    36   0.64 
UniRef50_O83084 Cluster: tRNA uridine 5-carboxymethylaminomethyl...    35   1.9  
UniRef50_Q3AWV4 Cluster: Putative uncharacterized protein; n=2; ...    33   4.5  
UniRef50_A4B4E8 Cluster: Sterol desaturase family protein, putat...    33   4.5  
UniRef50_Q1DL24 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_UPI00006CD2D4 Cluster: Orn/Lys/Arg decarboxylase, major...    33   7.8  
UniRef50_UPI00006CC384 Cluster: hypothetical protein TTHERM_0058...    33   7.8  

>UniRef50_Q7SF02 Cluster: Predicted protein; n=1; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 353

 Score = 36.3 bits (80), Expect = 0.64
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = +2

Query: 350 YRINARIPEVVPQLKVSKKPRTIPPKLKHRLNIPIEGSPIEVLENTIKEVI 502
           + I +R+P ++P L+ +K+P T  P L  R+N+ +   PI V   T++ +I
Sbjct: 32  WEIASRLPAILPPLR-AKQPSTQKPPLIPRVNLHVHPDPIRVSYKTVRALI 81


>UniRef50_O83084 Cluster: tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme gidA; n=6; Spirochaetaceae|Rep: tRNA
           uridine 5-carboxymethylaminomethyl modification enzyme
           gidA - Treponema pallidum
          Length = 630

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 25/98 (25%), Positives = 42/98 (42%)
 Frame = +2

Query: 185 DLSMIVRKLATVIRGNFSALNFATSKEGRACYLKLSEILNPHTVVNRLNRATFGCYRINA 364
           DLS++ ++ A  I   FS  +   ++    CY+  +       +    +R+ F   RI A
Sbjct: 221 DLSVMEKQEADAIMRPFSFAHVEINRPHADCYINYTNERTHQLIRENFHRSPFFSGRIKA 280

Query: 365 RIPEVVPQLKVSKKPRTIPPKLKHRLNIPIEGSPIEVL 478
                 P   +  K R  P +++H+L I  EG   E L
Sbjct: 281 VGTRYCP--SIEDKVRKFPDRIRHQLYIEPEGLDTEEL 316


>UniRef50_Q3AWV4 Cluster: Putative uncharacterized protein; n=2;
           Synechococcus|Rep: Putative uncharacterized protein -
           Synechococcus sp. (strain CC9902)
          Length = 380

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 526 WKLVIIFRYNFFYCIFQNLYRTPFDWNVKSMFQLWRYSSWFL 401
           W LV++  +N  YCI+  L +T F  N  +    WR  SW +
Sbjct: 144 WFLVVLILFNALYCIWVGLRKTKFSINQATSVPGWR--SWLI 183


>UniRef50_A4B4E8 Cluster: Sterol desaturase family protein,
           putative; n=6; Proteobacteria|Rep: Sterol desaturase
           family protein, putative - Alteromonas macleodii 'Deep
           ecotype'
          Length = 315

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 628 LIVRFHNTFEALGNYLSHSQYKLFSKFLIHHKCSWKLV-IIFRYNFFYCIF 479
           L++ F +  +   + LSHS   L++    HH   +  V II+R NFFY +F
Sbjct: 101 LLLIFDDMMQYWWHRLSHSTRFLYNLHRAHHNAKYMSVRIIYRNNFFYYLF 151


>UniRef50_Q1DL24 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 336

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 535 KCSWKLVIIFRYNFFYCIFQNLYRTPFDWNVKSMFQLWRYSSW 407
           +C+W+  +     F Y +F NL   PF W+V+  F L+R   W
Sbjct: 22  QCTWRNAV-----FIYVLF-NLKSAPFSWHVRLFFHLFRRIRW 58


>UniRef50_UPI00006CD2D4 Cluster: Orn/Lys/Arg decarboxylase, major
           domain containing protein; n=3; Tetrahymena thermophila
           SB210|Rep: Orn/Lys/Arg decarboxylase, major domain
           containing protein - Tetrahymena thermophila SB210
          Length = 468

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 20/65 (30%), Positives = 34/65 (52%)
 Frame = +2

Query: 440 LNIPIEGSPIEVLENTIKEVISEYNHKFPGAFVMNKKLGKKLILGMRKIIAQRLERIMES 619
           ++I  E + IE L   ++E+  +Y HK      +N++L    +   RKI+   L ++M S
Sbjct: 354 IHINTEDADIEKLIKAVREISKKYEHKTQYDQSINQELIYVQLTKKRKILTP-LTKVMSS 412

Query: 620 DDETR 634
           D E R
Sbjct: 413 DKEER 417


>UniRef50_UPI00006CC384 Cluster: hypothetical protein
           TTHERM_00589970; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00589970 - Tetrahymena
           thermophila SB210
          Length = 375

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +2

Query: 89  KVTLTLINSIIKVNLTKRVMSVIEVRHFPPKWDLSMIVRKLATVIRGNFSALNFATSKEG 268
           ++  T + SII ++  K ++ + +     P+ DL +    +   ++     LNF+TS E 
Sbjct: 222 QIQKTRVQSII-IDFQKLLLQICDFIELKPQNDLIIFEDMIKKYLQN--LVLNFSTSSEK 278

Query: 269 RACYLKLSEILNPHTVVNRLN 331
              +    EILN   +++R N
Sbjct: 279 EVLFQYFKEILNTDNILSRFN 299


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,189,288
Number of Sequences: 1657284
Number of extensions: 11526899
Number of successful extensions: 27583
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27565
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)