Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C22
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    30   0.33 
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    26   4.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.5  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 356 INARIPEVVPQLKVSKKPRTIPPKLKHRLNIPIEGS 463
           I  R+P  VP   +S KP  IP  +   LN+ +E S
Sbjct: 588 IPPRVPTPVPGRTLSPKPTRIPTPIPSSLNVSLESS 623


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 389 LKVSKKPRTIPPKLKHRLNIPIE 457
           LK+  K R+IP   KHR  +P++
Sbjct: 251 LKIKAKKRSIPLSQKHRTLVPVD 273


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 388 IKSIKE-TKNYTAKVET*T*HSNRRESYRGSGKYNKR 495
           I  +K+ T+    + +T T HSNRRES R S  Y+ R
Sbjct: 142 ISKLKDRTEASKEESKTVTDHSNRRESRRESTYYDSR 178


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 556  SKFLIHHKCSWKLVIIFRYNFF 491
            S+F++ +K  W LVI   YN F
Sbjct: 2261 SRFIVRNKTRWSLVIAEPYNDF 2282


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 562 LFSKFLIHHKCSWKLVIIFRYNFFYCIFQNLYRTPFDWNVKSMFQL 425
           ++S+  + +K S  L  + RY F    F  LY   F + + + F+L
Sbjct: 1   MYSQHELRNKVSLALSSLLRYTFELTPFFELYEADFAYALYAGFEL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,813
Number of Sequences: 5004
Number of extensions: 52795
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)